Pseudoliparis swirei (Mariana hadal snailfish): 130207886
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Entry
130207886 CDS
T09868
Name
(RefSeq) immunoglobulin-like and fibronectin type III domain-containing protein 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
fn3
Ig_DSCAM-DSCAML_C
Ig_2
ig
THB
C2-set_2
Pur_ac_phosph_N
PspB
Motif
Other DBs
NCBI-GeneID:
130207886
NCBI-ProteinID:
XP_056292599
LinkDB
All DBs
Position
18:6818321..6835639
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AA seq
1505 aa
AA seq
DB search
MKHEGWPHQQHDTAVFTYFFLLLTVAIKKRSRVPGVMITQCVEQLPVGKSTPDFARKPMP
VTTQEGKKVFFRAMVSGEPAPAVTWGRNKGEVDDPEKYMTRYDERAQEHVLEVLCVKPDQ
ADTYKCFATNEYGVAVCTATLNVIEVGFKKKGKDANEQVTQDFRKMLKKTVVTRKKQLPP
KKEGEIDPKLIELLICAPKKDYEKICVDFGVTDFRWLLKRLNQLKKETQDKQAKVVEQLD
NLKQIEVQPNGRAEFSLDMKLHDPDSAINLYKDGTMLPYGDDDDSKHSLKKTGTTYLFSI
KDADAEDAGFYQVDVEETNVLTTDFQVPAVEFIAKIKDVKASESEDAIFQCVLSTPLNRI
TWSNTASSLEHGDKYDITVSDDKLIHTLRVKDCKLGDNGAYYAIAGITSSCASLKVEGSE
GHTGNQVASERQAKLQKEKDDLEAARRAQPERDAAGDGGDGGEGGDKGGDGTDKNLPTEG
GDENKGNDAEKKTKRVRAGPLVPDTVIARGVQFVCGLSDTVANIGERAELSCKLSSDTSE
GRWYKNEKLLTSEDGVIMIKDGACHRLVIDCCKKDDAAVYCFEAEGRKSEATLNIQDPPI
IDDDALGKFTKPVIIKAGENAEWKMPFSGGAPMNIQWFKDDDDLSPALNVKIETSATESK
LRLVKRQRKDGGEIKIKIKNEFGTTEAISKLIVLDKPTPPQGPVDIMESAVTSVEFKWKP
PKHSGGCPVTHYVLERQQVGRNKWSDLGEIPGSNPSYKDSDVTPGRRYCYRIRAKNAEGL
SDSLQTEDIAAGVLRYPGSPTAPKVVGAFKDCINLAWCPPCDTGGTKIVGYNLEKNKKGT
NYWSLVNHGVPITDTKYAVKDVFEGAAYEFRVSAINLSGAGDPSIPCDTVIARDPMKPPG
KVTDLKLTSSNYTTFSLAWTKPKEIKGVEDEARGYYVEIRPIENLEWTRCNAISITLTSY
TVLGLKAMASYWVRVIATNYGGDGEPHGFDSYVIAMPPPVRPKFKDRNMKTFMVVRSGNT
VRLNINFEASPLPQIVWQKDGTPVSKHVTVTSSDKGSQMLIPTSERSDSGIYTLTVKNSV
GQESVNVEIRVTDDPKPPGPVELSQNIPGTVTLSWTSSPDEKRDDRLHYMVSMRDSFKRT
WRTVADNLFNNKFTVINIMSGREYNFRVFAKNDMGLSPCSESPVFGTMRPKGKFKVNPPE
RKSLDLQSPPSFIVPLKPRTAPQGYESYMSCAVRGDPAPRVTWYHNNISLNTNTNYHVTN
VCGVCSLLILTVGPRDHGGYKVLIENKLGTAESSMTLVVRVWLFIVVFTTGASVMGWFCA
QQQQSLDQLSETFTTKQKRVATLQRVVEILILVLRLFALEEAQKQAQKTAEFALATSEKL
RNFDNYDELWALQDETDSRLTEIKQVVLSVTTLQAMFSHHSEEFEAVKESVVAGLSSSSA
LAENVAWLAGAVLGASARVDEQVASAEALNAQLDGQASDLSELKESLDLHKDVLHTNNQE
MAAIK
NT seq
4518 nt
NT seq
+upstream
nt +downstream
nt
atgaaacatgaaggatggccacaccaacaacatgacacagcagtgtttacctatttcttc
ctgctcctaacagtggccatcaagaaaaggtccagggtccccggggttatgatcactcag
tgtgtcgagcaactgccggtagggaagtcaacccctgactttgcccggaagccaatgccc
gtgactactcaagagggtaaaaaggtatttttcagagccatggttagtggagagccggcg
ccagctgtgacatgggggcgtaataaaggcgaggtcgacgacccagaaaaatacatgacc
agatacgatgaaagagctcaagagcacgtcctagaggtactctgtgtaaaaccagatcaa
gccgacacctacaagtgcttcgccaccaatgagtacggagtggccgtctgcacggcgact
ctcaatgttattgaagttggtttcaagaagaaaggcaaagacgcaaatgaacaagtaaca
caagatttcagaaaaatgctaaagaaaactgtcgtcaccagaaaaaaacaactcccgccg
aagaaagaaggcgaaattgatccaaagctcatagaactgctcatctgcgctccgaagaag
gactacgaaaaaatctgtgtcgactttggcgtcaccgacttccgctggttgctgaagaga
ctcaaccagctgaaaaaggagacgcaagataagcaggccaaggtcgtggagcagctggac
aacttaaaacaaatagaagtgcaaccaaatggaagagccgagtttagcctggacatgaaa
ctccatgatcccgacagcgcaatcaacttatacaaggacgggacgatgcttccatacggg
gacgacgacgactcaaagcacagccttaagaaaacagggacaacatatctgttcagcatc
aaagatgccgatgcagaagatgctggtttttaccaggtcgatgttgaagaaacaaatgtc
cttacgactgactttcaagtgcctgctgtggagttcatagccaagatcaaggatgtgaag
gcctcggagagtgaggacgccatcttccagtgcgtcttgtcaacgcccctcaacagaatc
acctggtccaacacggcttcgtcacttgaacatggggacaaatatgacatcaccgtctca
gacgacaagctaattcacacgttgagagtcaaagactgtaaattgggagataatggagcg
tattatgctatcgctggcataacatccagctgtgcttctcttaaagtggaaggaagcgag
ggccacactgggaaccaagtagcatcggagcggcaggccaagctacaaaaagagaaagac
gacctggaggcagccagacgagcgcagcctgaaagggatgccgccggggacggaggtgat
ggaggcgagggcggagacaagggcggagacggcacggataaaaacctcccgacggaagga
ggggatgaaaataaagggaacgatgcagagaagaaaacgaagcgagtgcgagccggtccg
ttggttcctgacaccgtgatagctcgcggcgttcagttcgtctgtggcctgtcggacacc
gttgctaatatcggtgaacgggcggagctgtcttgcaaactaagcagcgacacctctgag
ggacgttggtataaaaatgagaagctgctaaccagtgaggatggggtaataatgatcaaa
gatggagcctgtcacaggttggtaattgattgctgtaaaaaagatgacgcagctgtgtac
tgctttgaagccgaaggccgtaaatcagaagcaacgcttaatattcaagatccaccaata
atcgacgatgacgcgctcggaaaattcacaaagccggtcattataaaggcaggtgaaaat
gcagagtggaagatgccattctcagggggggctccgatgaatatacagtggttcaaggat
gacgatgatctttcgcccgctctcaatgtgaagattgaaacatccgccactgaaagcaaa
ctacgccttgttaagcgtcaaaggaaagatggtggcgagatcaaaataaaaataaaaaat
gaattcggtacgacggaagctatttccaaacttatcgtactggacaaacccacaccgcct
caggggccggtggacattatggaaagtgccgtaacatccgtggagtttaaatggaagcca
ccaaaacacagcggcggatgcccggtcacacactatgtcctcgaacgccaacaagtcggg
cgtaataaatggtcagatctcggtgagatccccggcagcaacccaagttataaagattca
gacgtgacccccgggaggagatactgctaccggatcagagccaagaacgcagaaggcctc
agtgattccctgcagactgaggacatcgcagctggtgtattacgttatcccggatcccca
acagcaccaaaagtggtcggtgcctttaaagattgcatcaatctggcatggtgtcctcca
tgtgacactggaggaaccaaaatagtgggatacaacttggaaaagaacaagaagggcaca
aattactggagccttgtaaaccatggggtgcctattacagatacaaagtatgcagtgaaa
gatgtttttgaaggggcagcatatgaatttcgggtgtctgccatcaacttatctggagct
ggagatcctagtattccatgtgacacggtaatcgcaagagatccaatgaaacctccaggg
aaagtcacagatctgaagttaacatcctccaattacaccacattttcactggcttggaca
aaacctaaagaaataaaaggggtggaggatgaagcccgaggctactatgtggagatcaga
ccaatagaaaaccttgaatggactcgttgtaatgccatctcaattactttaacttcctac
accgtgcttggcttgaaggcaatggccagctactgggtgagggtgattgccaccaattat
ggaggcgatggagaacctcacggcttcgacagttacgtcattgctatgcctcctcctgta
aggccaaagtttaaagatcgcaacatgaagaccttcatggtggtacgatctggcaatact
gtccgtctgaacatcaactttgaggcctcccccctgccacaaattgtgtggcaaaaagat
ggtactccagtgtccaaacatgtgaccgttaccagctctgataaaggctctcaaatgtta
atccccacatctgagcggtccgacagtggcatctacaccctgaccgtcaagaacagtgtc
ggccaggagagcgtcaatgttgaaatcagagtcacagatgatcccaagcctccaggtcca
gtggagctgagtcagaacatcccaggaacagtgactctgtcctggacctcctctccggat
gagaagagggatgacagactacactacatggtatccatgcgtgactccttcaaacgcact
tggaggacagtggctgacaacctcttcaacaataagttcacagttatcaatattatgtct
ggacgggagtataacttcagggtcttcgctaaaaatgacatgggtctgtcaccatgttcc
gaatcccctgtgtttgggaccatgcgtccaaaaggaaagttcaaagtgaacccgccagag
agaaaatccctcgacttgcagtcaccgccgtcattcatcgttcccctgaaaccgcgtacc
gctccgcagggttacgagagctacatgagctgcgcggttcggggagatccagctccacga
gtgacgtggtaccacaacaacatcagcctgaacaccaacaccaactaccacgtcaccaac
gtgtgtggagtctgctccttgctcatactgacggtgggaccccgagaccacgggggatac
aaagtgctcatcgagaacaaactggggacggccgagtcctccatgacactggtcgtcaga
gtgtggttgttcatcgtcgtcttcacaaccggggcctctgtgatggggtggttttgtgca
cagcagcagcagagcctcgaccaactgtcggagacttttacaacgaagcaaaagagagtc
gcaaccctccagcgggtggtggagatactgatactggtgttgaggctgtttgccctggag
gaggcccagaaacaggctcagaagacggctgaatttgctctggccacttcagagaagttg
aggaatttcgacaactacgatgagctgtgggccctccaagatgagacggactctcgactg
actgagataaagcaggtcgtcctgtccgtcacaaccctccaggccatgttcagtcaccac
agtgaggagttcgaggctgtgaaggagagcgtcgtggccggtttgagctccagctcggca
ctggccgaaaatgtggcttggttagccggtgctgtgctcggtgcatccgccagagttgac
gagcaggttgcatcggcagaggctcttaatgctcagttagacggtcaggcctcagacctg
agtgagctgaaagagtcactggaccttcataaagatgtacttcacacaaacaaccaggag
atggctgcaataaagtga
DBGET
integrated database retrieval system
