Pseudoliparis swirei (Mariana hadal snailfish): 130208060
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Entry
130208060 CDS
T09868
Symbol
pbrm1l
Name
(RefSeq) polybromo 1, like isoform X1
KO
K11757
protein polybromo-1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130208060 (pbrm1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130208060 (pbrm1l)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130208060 (pbrm1l)
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130208060 (pbrm1l)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
130208060 (pbrm1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
CHDNT
Motif
Other DBs
NCBI-GeneID:
130208060
NCBI-ProteinID:
XP_056292919
LinkDB
All DBs
Position
18:complement(13511896..13526637)
Genome browser
AA seq
1645 aa
AA seq
DB search
MSASSKRRRATSPSSSVSGGGDLDDASSTPGSGRKRRRISNVPPVDTVNSLDIAVCHELF
NAVRDHKDDQGRQFSDVFQRVPKRRNQPDYYETVSQPIDMTKIQYKLKSEDYNDVEQLTA
DFHLMFNNAKSFYKSDTEEYRSACKLWEVYLKTRNEFVQPGDGDEDDEDGDDMMDNPGMS
TEDETSTGNLKELFEQLLEALVSHADPSGRLISELFQKLPSKVHYPDYYAIIKEPIDLRT
IAQRIQIGYYKSVNAMAKDVDLMAKNAKTYNEPGSQVFKDANTIKKVFIQRKTDLEHAEP
TKSSLRIRNRRSGQGDQLSGVSVALHYGSESEDDPVLSGSVCYDEGESEAESQSSSMEMS
NPIFQLYEAVRGARNNQGQVFSEPFQHLPSRREYPDYYQQIKQPLALHQIRAKMKNCEYE
NVEQMDADLTQMFENAKRYNMPNSSIYKRAFRLQQILQAKKRELVRRDDEDGDSILSSDT
GSIKRKSHKKNVKKNRMKNIYTAVIESRESGTNRRLCDLFMVKPSKKDYPDYYKVILEPM
DLKTIEHNIRIERYATEDALMEDMKLMFRNARHYNEEGSQVYNDADVLEKILKDNCKELG
TLAEEEDLGSPKLKLRKIGVSPKKSKYITPLQQRLNELYDAVRNFTDRRGRRLSTIFLRL
PSRAELPDYYATIKRPIDMERLRSHMAGGRYQDVESLVEDFSLMFNNACIYNEPESLIYR
DALVLHRVLLETRKQQEGGEDSGPPNVGHLVRELIRNLFVSVLGHQDEEGRCYSDSLAEI
PAVDPAAPEKTPQNFDVIRVNVDRGHYRRLDVFQEHMFEVMEKARRLHRTDSEIFEDAVE
LQQFFIKIRDELCKNGEILQSTSLNYTSKHLHSDVEQEKREKIPKEIEEDKLKTEEEEKE
KNKEREKAKDLPGESWKSESESERVYTQVCSFENITYHVGDFVYVEPSEPNLKPHIVCIE
RLWEDEAGGKWLHGCWFYRPSETFHLTTRKFLEKEVFKSDYYNKVSISKILGKCVVLFVK
DYFKMQAEGYRAEDVYICESRYAGRNKSFKKIKIWAVTASSVKLVAREVPLPVFRVASMF
AKHDKQTVAYAGSGSFIDKEREDVPIEMSGADPGCQHYEQLPYNNVWFKVGDCVYIQSHG
LSKPRVARIEKLWVQNGTTFFFGPIFIHPEETEHEPTKMFYKREVFLSQLEETLPITCVT
GKCMVSSFKDYLSCRPTEISEEDILLCESRYIDTEKQIKKFKGLKRFSFSSKVVEDEIYY
FRKVIVPQKEASPVLDKKINELEVKLADVDIDDDMEDMDDDDEAPRTPSLPQMQTPLASD
TDTIPYTPQSTPKVKGLSKKEGAKRKINMSGYILFSSEMRAVIKARNPDFSFGELSRLVG
TEWRNLEATKKAEYEERAAKIVDQQERDRPPQKQASPRAGTPVGSLMGVVPSPSAMGMIN
QTMTPVSGMMGAYGPPYMSMQGPHEGLLSVATMLPHPAGGPPLPHHHLQHGMPGYPGMPH
QGMMGAGMNGMAGSPTPGNFMQQPGMFSPGPHAPPPYPGQGTSSHLQPTSPMFVAPPPKT
QRVLHSEAYLKYIEGLNSDSNTISKWDQTLRAQRRDAHLTKEQESRLPAHWLKSKGAHTT
MADALWRLRDLMLRDSLNICQGYNL
NT seq
4938 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgagctcgaagaggagaagggccacttctccctccagcagtgtcagtggagga
ggggacctggacgatgcctcctctacaccgggaagtggcagaaaaagaagaagaatctca
aatgttcctcctgtcgatacagtaaattcacttgatattgctgtctgccacgagctgttc
aatgctgtcagagaccacaaggacgaccaagggagacagtttagtgatgttttccaaagg
gtaccaaagagaaggaatcagcctgattattatgaaacggtgtcccagccaattgatatg
acaaaaattcagtataaactgaagtcagaagattataatgatgtggagcagcttactgca
gatttccatcttatgttcaacaatgccaagtcattctacaagagcgacacagaggagtat
cgatctgcatgcaagctgtgggaggtatatttgaaaacacggaatgagtttgtgcaacct
ggagatggagatgaagatgatgaagatggtgatgatatgatggataatccaggaatgtca
actgaagatgagacctcaactggcaatttgaaagaattgtttgagcaactcttggaggct
ttagtgtcacacgctgatccctcagggcgtctgatcagtgaactgttccagaaattgccc
tccaaagtgcattacccagactactatgccattattaaggagccaatagatctgagaaca
atcgctcaaagaatacagattggatactataaaagtgtcaatgcgatggccaaggatgtg
gacctgatggccaaaaatgccaaaacgtacaatgaaccaggatctcaggtttttaaggat
gctaataccataaagaaagtcttcatccagcgaaagactgaccttgaacatgctgaaccc
actaaatctagtcttcgcatcagaaatcgcaggtctggccagggcgatcaactttctggc
gtcagtgtcgctctccactatggttcagagagtgaggatgacccggtgctctctggctcc
gtctgctacgacgagggagagtcagaggctgagagtcagagttctagcatggagatgagt
aacccgatattccagctgtatgaagctgtgagaggggccaggaacaaccagggccaggtc
ttctctgaacctttccagcaccttccctctcgcagggaatatcctgactactatcagcag
atcaaacaacctctcgccctgcaccagatccgggcaaaaatgaagaactgtgagtatgaa
aatgtggagcagatggatgctgacctgactcagatgtttgagaatgcaaagcgctacaac
atgcctaactcaagcatttacaaacgggcctttaggcttcagcagatcttgcaggcaaaa
aagagggaacttgtgaggagggacgatgaggatggagacagcattctgtcgtctgataca
gggagcatcaagaggaaaagccacaagaaaaatgtcaaaaagaacagaatgaagaacata
tacaccgcagtgattgagtctcgggagtcaggcaccaatcgccgcctttgtgatctgttt
atggtcaaaccatccaagaaggactacccggactactataaagtcatccttgaaccgatg
gacctgaagaccattgagcacaacatccgcattgaacgctacgcgaccgaggatgctttg
atggaagacatgaagctgatgttccgaaatgcccggcattacaatgaagagggatctcag
gtgtataatgatgctgatgttcttgagaagatactgaaggacaattgtaaggagttggga
actttggctgaagaagaagatctgggatctcccaaactgaaactaaggaagattggtgtc
tctccaaagaagtccaaatacatcactcctcttcagcagaggttaaatgagctctacgat
gctgtgcgaaacttcactgaccgccgaggtcggcgtcttagcacaatctttcttcgtctg
ccgtctcgtgccgagttgcctgactactatgccactatcaagagacccatcgatatggag
cgcctccgaagccatatggcgggcgggcgttaccaagacgttgaatcactggtggaggat
ttctctctcatgttcaacaatgcctgcatttacaatgagccagagtctctcatctatcgg
gatgctctagtgttgcaccgggtgctgctggagacacgcaagcagcaggagggaggcgaa
gactccggacctccaaatgtgggacatctggtgcgagagctgatcaggaacctgtttgtt
tccgtgctgggccaccaggacgaagagggccgatgctacagcgactctttggctgagatc
cctgctgtcgatccagccgcacctgaaaaaacgccgcaaaactttgatgtcatcagagtg
aatgtggaccgtggtcattacagaagactggatgtcttccaggaacacatgtttgaagtg
atggagaaagcaaggagactacacaggactgattctgagatatttgaggatgcagtggag
ctacaacagtttttcattaagatcagggatgagctctgcaagaatggagagattctgcag
tcaacttcactcaactacacgtcaaaacacctgcacagcgacgtggagcaggaaaagagg
gagaaaatccccaaagagattgaggaggacaagctaaagactgaggaagaggagaaggag
aaaaacaaagagagggagaaagccaaagacctgccaggagagtcatggaagtcagagtct
gagtcagagcgtgtttacactcaggtctgcagctttgagaacatcacctaccacgtgggg
gactttgtctatgtggagccgtcagagccgaacctgaaaccacacattgtctgtattgaa
cgcctgtgggaggatgaagcaggtgggaagtggctccatggctgctggttttacaggcca
agtgaaaccttccacttgacaacacgcaagtttctggaaaaagaggtcttcaagagcgac
tactataacaaagtgtccatcagtaaaattctgggcaaatgtgtggtcctgtttgtgaag
gattatttcaaaatgcaagcagagggctacagagcagaggatgtgtacatctgtgaatcc
cgctacgccggcaggaacaagtccttcaagaagattaagatatgggccgtgaccgcgagc
tctgtgaaacttgtcgcccgggaggtgccgttgcctgttttccgtgttgcttccatgttt
gccaagcatgacaaacagacggttgcatatgcaggcagcggaagctttattgacaaggag
agagaggatgtccccattgagatgagtggagctgaccccggctgtcagcactatgaacag
ttaccctacaacaatgtgtggtttaaagtgggagactgtgtttacatccagtcacatggt
ctgtcaaagccccgggttgctaggatagagaagctgtgggtgcagaatggaactactttc
ttctttgggcccatctttattcaccctgaggaaacggagcacgagcccacgaagatgttc
tacaagagagaagtgtttctgagccagctggaggagaccttgcccatcacctgcgtcaca
ggcaaatgtatggtgtcctcatttaaggactacctgtcatgcagacctaccgagatttca
gaagaggatatcctgctgtgcgagagtcgctatattgacacagaaaagcagataaaaaag
ttcaagggtctgaaacgcttctcattctcttccaaagtggtggaagatgagatctactat
ttcaggaaagtgattgtgccacagaaggaagcatcacctgttttggacaagaagatcaat
gagcttgaggttaaactggcagatgtagatatagatgatgatatggaagatatggacgat
gatgacgaggctccacggacgccgtctctgcctcagatgcaaactcctcttgcaagcgat
acggataccataccatacactccgcagtccactccgaaggtaaagggcttatcaaagaaa
gaaggggccaagaggaagatcaacatgagcggctatatattgttcagcagtgaaatgcga
gcggtcatcaaagcgcgaaacccagacttctcctttggggagctgagtcgactcgtgggc
accgagtggaggaacctcgaggctaccaagaaagccgagtatgaagaacgtgcagccaaa
atagtggatcaacaagagcgtgacagaccacctcagaagcaagcgtccccaagagcaggt
acccccgtagggtcactgatgggggtggtaccttcacctagcgctatgggaatgataaac
cagaccatgacacctgtgtcaggcatgatgggagcttacggcccaccttacatgtccatg
cagggcccccatgagggcttgttgagtgtggccacaatgctacctcaccctgcagggggg
ccccccctgcctcatcatcatctccagcatggtatgcctgggtaccctggcatgcctcac
cagggtatgatgggcgctggtatgaatggtatggcaggaagtccgacaccaggaaacttt
atgcaacagcctgggatgttcagcccaggaccgcatgctcccccaccatatccaggacaa
ggcacgtcttcacacctgcagcccacctctcccatgtttgtggctccaccaccaaagacc
cagagggtgctccactcagaggcctacctgaagtacattgagggcttgaattcagattct
aacaccatcagcaagtgggaccaaacgctcagagctcaaagacgtgacgctcacctgacc
aaagagcaggagagtcggcttccagcacactggctgaagagcaaaggagcccacaccacc
atggcagatgcactgtggcgcctgcgtgacctgatgctgagagactctctgaacatctgt
cagggatacaacctgtaa
DBGET
integrated database retrieval system
