Pseudoliparis swirei (Mariana hadal snailfish): 130208085
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Entry
130208085 CDS
T09868
Name
(RefSeq) cadherin-4-like isoform X1
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
130208085
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130208085
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Major cadherins
130208085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Stevor
DUF5527
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
130208085
NCBI-ProteinID:
XP_056292977
LinkDB
All DBs
Position
18:26108036..26317443
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AA seq
926 aa
AA seq
DB search
MNVGCVILACTLLVGASSGSKAGQPLKPACRPGFSQNFYTVIVSRDILHGQIILKDTTLS
SGRVKFEDCQPRSRDLGFVSSDPNYSVRPDGSVYAEQELSDLSEPVQFMVTARGLHDAHI
WETTVKLALAGHPHPAALTKGAIEEMLSRARDSQPRVIRFARRHLRGSASNGLRRQKRDW
VIPPINVPENSRGPFPHMLVRIRSDQDKASGIRYSITGAGADQPPSGIYNIDPVSGNMFV
TQPLDREERASFHLRAHAVDMNGNQVENPIDLYIYVIDMNDNRPEFLNQVYNGSVAEGSK
PGSSVMQVTASDSDDSTTANGMVRYRILSQTPHSPIPNMFTINSETGDIVTVAAGLDREK
VSQYTIIVQATDMEGNLNFGLSNTATALISITDINDNPPELTVRTFSGEVPENKVNVVVT
NLTVLDRDQPHSPNWNAVYRIVSGDPAGHFAIRTNPVTNEGMLTVVKPVDFEMNRAFMLT
VVVSNQAHLASGIQSSLQSTAGVTISVQDVNEPPVFPVNPKMIRFEEGVPAGTTLTVFAA
QDPDHFIHQIVRYSKLSDPANWLKINKTNGQITTMALLDRESVYVKNNVYEATFLAFDNG
SPQASGTGTLQIYLIDVNDNAPVLIPRESQVCALARPNSRVNITAADADADPNVGPFVFE
LPSFPASVRRNWTISRLSGDYAQLRLKLPYLEASVYEIPVVVSDSGNPPLSNRSVIRVKV
CHCDDNGDCSATGAVAAAGLGTGAIIAILICIIILLTMVLLFVVWMKRREKERQAKPLLI
DPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPESLDHIITKPAGVRRVDERPVIAESQY
PVRPSLPHPGDIGDFIHDGLRAADNDPTAPPYDSLLVFDYEGSGSTAGSVSSLNSTSSGD
QDYDYLNDWGPRFKKLADLYGGGEGD
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtcggctgcgtcatcctggcgtgcaccttacttgtgggcgcctcctcggggagt
aaggcgggccagcccctcaaacccgcctgccgaccgggtttctcccagaacttctacacg
gtgatcgtctccagagacattctgcacggccagatcatcctcaaagacaccaccctgtcc
agtggacgtgtgaagttcgaggactgccaaccgcgcagccgagatctgggcttcgtcagc
agcgacccaaactacagcgtgaggcccgacggctcggtgtacgccgagcaggagctgtcc
gacctgtcggagcccgtccagttcatggtgacggcccgggggctccacgacgcccacatc
tgggagaccaccgtcaagctggcgctggccggacaccctcaccccgcggcgctgacgaag
ggcgccatcgaggaaatgctgtcgcgagcccgggactcccagccccgagtgatccggttc
gctcggaggcacctgagaggctccgcctccaacgggctgcggcgccagaagagggactgg
gtgatcccgcccatcaacgtgcccgagaactccagaggacccttcccccacatgctcgtc
agaatccgctccgaccaggacaaggcctccggcatccgctacagcatcacgggcgccggc
gccgaccagccgccgagcggcatctacaacatcgaccccgtcagcggcaacatgttcgtc
acgcagcccctggaccgcgaggagagagcctccttccacctgcgagcgcacgccgtggac
atgaacgggaaccaggtggagaaccccatcgacctgtacatctacgtgatcgacatgaac
gacaaccggcccgagttcctgaaccaggtctacaacggctccgtggcggaggggtccaaa
ccgggctcgtccgtgatgcaggtgacggccagcgactcggacgactccaccaccgccaac
ggcatggtgcgctaccgcatcctgtcccagacgccccacagccccatccccaacatgttc
accatcaacagcgagaccggagacatcgtgacggtggcggccggcctggacagagagaaa
gtgtcccagtacaccatcatcgtccaggcgaccgacatggagggcaacttgaacttcgga
ttgtccaacacggccacggctctcatcagcatcaccgacatcaacgacaaccccccagaa
ctgaccgtcagaaccttctcgggggaggttccagagaacaaggtgaacgtggtggtgacc
aacctgacggttctggaccgggatcagcctcacagccccaactggaacgccgtgtaccgc
atcgtcagcggcgacccggccggacacttcgccatccgcaccaaccccgtcaccaacgag
gggatgctgacggtcgtcaagccggtggatttcgagatgaaccgcgccttcatgctcacc
gtggtggtctccaaccaggcccacctggccagcggcatccagtcgtcgctccagtccacg
gcgggcgtcaccatctcggtgcaggacgtcaacgagccgcccgtcttccccgtcaacccc
aagatgatccgcttcgaggagggcgttcccgccggcaccacgctgaccgtgttcgccgcc
caggaccccgaccacttcatccaccagatagtcaggtactccaagctgtcagacccggct
aactggctgaagatcaacaagaccaacggtcagatcaccaccatggcgctgctggaccgc
gagtcggtgtacgtgaagaacaacgtgtacgaggccacgttcctggcgttcgacaatggc
tcacctcaagccagcgggacggggaccctccagatctacctgatcgacgtgaacgacaac
gccccggtgctgatccccagggagtcccaggtgtgcgcgctggcccgccccaactccagg
gtcaacatcacggcggcggacgccgacgccgaccccaacgtggggcccttcgtcttcgag
ctgccgtccttccccgccagcgtccgccgcaactggaccatctcccgcctcagcggcgac
tacgctcagctgaggctgaagctgccgtacctggaggcgagcgtgtacgagatccccgtc
gtcgtgtccgactcggggaacccccccctgtccaaccgctccgtgatccgggtcaaggtg
tgccactgcgacgacaacggggactgcagcgccacgggggcggtggcggccgccggcctc
ggcaccggcgccatcatcgccatcctcatctgcatcatcatactgctcaccatggtgctg
ctgttcgtggtgtggatgaagcgcagagagaaggagcgccaggcgaagccactgctcatc
gaccccgaggacgacgtcagagacaacatcctgaaatatgacgaggaggggggaggagag
gaggaccaggactacgacctgagccagctgcagcagcccgagtctctggaccacatcatc
accaagccggcgggggtgcgccgcgtggacgagagacccgtgatcgccgagtcccagtac
cccgtcagacccagcctgccccaccccggggacatcggagacttcatccacgacggtctg
agggcggcggacaacgaccccacggcccccccctacgactccctgctggtgttcgactac
gagggcagcggctcgaccgccggctccgtcagctcgctgaactccaccagctcaggggac
caggactacgactacctcaacgactgggggccccgcttcaagaagctggccgacctctac
gggggaggggagggagactga
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