KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130208143
Entry
130208143         CDS       T09868                                 
Name
(RefSeq) WD repeat-containing protein 82-like
  KO
K14962  COMPASS component SWD2
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    130208143
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pswi03019]
    130208143
   03036 Chromosome and associated proteins [BR:pswi03036]
    130208143
Messenger RNA biogenesis [BR:pswi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     130208143
Chromosome and associated proteins [BR:pswi03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     130208143
    COMPASS/SET1 complex (yeast)
     130208143
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I WDR55 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_SPT8 Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_EIPR1 NBCH_WD40 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_NUP159_NUP214 Beta-prop_WDR19_1st PQQ_2
Other DBs
NCBI-GeneID: 130208143
NCBI-ProteinID: XP_056293088
LinkDB
Position
18:14774962..14778440
AA seq 315 aa
MKITDSVVRSFRVARTYRVNSQKVNCVDFSPNGENAIASSDDDCIVLYDIREGKPERNLF
SKKYGVDLIRYTHGDAQTVVYSSNKLDDTIRYLSLTDNKYIRYFPGHTARVIALSMSPVD
DTFISGSLDETIRIWDLRAPNCQGLTNPLGKPVCSFDPDGLIFAAGVESQAIKLYDLRAF
DKGPFASFDVRFNRVCDWTGLKFSNDGKQILISTNGGMICVLNAFNGSVLHTFSGYNNSK
GISLEACFTPDSQFVMIGSEDGRVHVWSTESGMKVAVLDGKHPGPINTLQFNPRYMTFAS
ACTNMTFWLPCIDET
NT seq 948 nt   +upstreamnt  +downstreamnt
atgaagatcacagacagcgtggttagaagtttcagggttgcccgaacatatcgagtcaat
tcacagaaagtcaactgtgtggacttcagcccaaatggtgaaaatgcaatagcgagtagc
gacgacgactgcattgtgttatatgacatccgagaaggaaaacctgaaagaaacctgttc
agcaagaagtatggagtcgacctcatccgctacacacatggagatgcacagacagtagtc
tacagctccaacaaacttgatgataccatccgatatttgtcactcactgacaacaagtac
atcaggtatttcccaggtcacacggcaagagttattgctctctccatgtcaccagttgat
gacacgtttatctcgggctcgttggacgaaacaatccggatctgggatctgcgcgctcca
aactgtcaaggtttgaccaatccactgggcaaacctgtatgttcctttgaccccgatggt
ctgatatttgctgcaggggtagaatcacaggccattaaactgtacgacctgcgtgctttt
gataagggtcccttcgcctcctttgatgtgaggtttaatcgtgtctgcgactggactgga
ctcaaattcagtaatgacgggaaacagattctcatctccaccaatggagggatgatttgt
gtcctgaatgctttcaatggatctgtgctgcacactttttctggctacaacaacagtaaa
gggatctccctggaggcctgcttcactccagactctcagtttgtcatgattggttcagag
gacgggagagtccatgtttggagcactgagagtgggatgaaggttgctgtgctggatggg
aagcatcccggacccatcaacactctgcagttcaaccccagatacatgacgtttgccagc
gcttgcacgaacatgacattttggctcccgtgtattgacgagacatag

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