Pseudoliparis swirei (Mariana hadal snailfish): 130208225
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Entry
130208225 CDS
T09868
Symbol
cxxc1b
Name
(RefSeq) CXXC-type zinc finger protein 1b isoform X1
KO
K14960
COMPASS component SPP1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130208225 (cxxc1b)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130208225 (cxxc1b)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
130208225 (cxxc1b)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
130208225 (cxxc1b)
COMPASS/SET1 complex (yeast)
130208225 (cxxc1b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CpG_bind_C
zf-CXXC
PHD
PHD_5
MutS_IV
DUF7813
PNM8A
Motif
Other DBs
NCBI-GeneID:
130208225
NCBI-ProteinID:
XP_056293205
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Position
18:complement(25499722..25507086)
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AA seq
568 aa
AA seq
DB search
MDSELSDIDHAPGPETSSMEGENAPLYCICRKPDINCFMIGCDNCNEWFHGHCINITEKK
AKAIREWYCTRCKDKNSSLEIKYRTKKNREKEVEYDRGSDRQYSTPSTPDYKSERRRGSK
VKRSVRMCGECEPCRRTEDCAVCDFCKDMKKFGGPNKIRQKCRFRQCEVRARKMLRVKDE
EMKARRDNSYHRRRLYSDDYDSEADLYQQYKASGNNNMAWNSDEDDEQPFSPVVRKKAVK
VKHVKRREKKYDKKKESRRHKQKQKHKDKTRYSEKGELRDNTGQRQCLGPSCVETTKPNS
KYCSEDCGMKLAANRIYEILPQRIQQWQQSPCIAEEHGKKQLERIRREQQNARLRLTEME
RRFHELEGIIAKAKQQAAQQDEEANEGDSEDTDLQIFCVSCSHPINPKVALRHMERCYAK
YESQTSFGSMYPTRIDGATRLFCDVYNPQSKTYCKRLQVLCPEHSRDPKISLDEVCGCPL
VKNVFELTGDYCKVPKRKCNKHYNWEKLRRAEVDLERVRVWYKLDELFEQERNVRTAMTN
RAGLLALMLHQTIQHDPVTTDLRSNKDR
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggacagcgagttgtctgacattgaccatgcaccggggcctgagaccagcagtatggag
ggtgagaacgcacccctgtactgcatctgccggaaaccagacatcaactgtttcatgatt
ggctgcgataactgtaatgagtggttccatggccactgcattaacatcactgaaaagaag
gcgaaagcaatccgcgaatggtattgcacgagatgcaaagataaaaactcctcactggaa
ataaagtatagaacaaagaagaaccgagagaaggaggtcgagtatgacagaggatctgat
agacagtacagcaccccgagtactcctgactataagagtgaaaggcggcgtggatcaaaa
gtgaagcgttcggtgcgaatgtgtggcgaatgtgagccctgcagaaggacggaggactgt
gccgtgtgtgacttctgcaaggacatgaagaagtttggaggccccaacaaaatcagacag
aagtgcaggtttaggcaatgtgaggttcgagccaggaaaatgctgcgcgtgaaggacgag
gaaatgaaagcaagaagagataattcctaccacagacggagactatactcggacgactac
gacagtgaggcggatctctaccagcagtacaaggcatcggggaacaacaacatggcatgg
aatagcgatgaagacgacgagcagcccttcagtcccgttgtgcgtaagaaagctgtgaag
gtgaagcacgtgaagagaagagaaaagaagtacgacaagaaaaaggaatcacggcgccac
aagcagaaacagaagcacaaagacaaaaccagatacagcgagaagggcgaactccgggac
aacactggacagcgtcagtgtctgggacccagctgtgtggagacaacaaaacccaactcc
aaatactgctctgaggactgtggcatgaagctggctgccaatcggatctacgagatcctc
cctcagcgtatccagcagtggcagcagagtccctgcatcgccgaggagcacggtaagaag
cagctggagcgcatccgccgggagcagcagaacgcccggctgcgcctcacggagatggag
cgacgcttccacgagctggaaggcatcatcgccaaggccaagcagcaggcggcgcagcag
gacgaggaggcgaatgaaggcgacagcgaggacacggacctgcagattttctgtgtgtct
tgtagtcatcccatcaatcccaaagtggccctgagacatatggagagatgttacgcaaag
tatgagagtcagacctcctttggctccatgtacccgacaaggatagacggagcaacccga
ctcttctgtgatgtgtacaatccccaaagcaaaacctattgtaagaggctgcaggttttg
tgtccagaacattccagagatcctaagatctcactggatgaggtgtgtggatgtcctctc
gtgaagaatgtgtttgagctgaccggagactactgcaaggtccccaaaaggaagtgcaac
aagcattacaactgggaaaagctgaggagagcagaggtggacttggagcgagtcagggtg
tggtacaagttggacgagctcttcgaacaggaacgcaatgtcaggaccgcgatgactaac
agagccggtctgctcgctctgatgttgcaccagaccattcaacacgaccctgtgacgacc
gatctccgtagcaacaaggataggtag
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