Pseudoliparis swirei (Mariana hadal snailfish): 130208328
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Entry
130208328 CDS
T09868
Symbol
hcfc1a
Name
(RefSeq) host cell factor 1a
KO
K14966
host cell factor 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03083
Polycomb repressive complex
pswi04980
Cobalamin transport and metabolism
pswi05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
130208328 (hcfc1a)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
130208328 (hcfc1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
130208328 (hcfc1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pswi01009
]
130208328 (hcfc1a)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pswi03036
]
130208328 (hcfc1a)
03029 Mitochondrial biogenesis [BR:
pswi03029
]
130208328 (hcfc1a)
Protein phosphatases and associated proteins [BR:
pswi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130208328 (hcfc1a)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
130208328 (hcfc1a)
HMT complexes
COMPASS/SET1 complex
130208328 (hcfc1a)
MLL-HCF complex
130208328 (hcfc1a)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
130208328 (hcfc1a)
Mitochondrial biogenesis [BR:
pswi03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
130208328 (hcfc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_5
Kelch_3
Kelch_4
Kelch_1
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
130208328
NCBI-ProteinID:
XP_056293348
LinkDB
All DBs
Position
18:25534478..25548202
Genome browser
AA seq
1805 aa
AA seq
DB search
MSAPGSAVSGTTAAVLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDEL
HVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWE
WKKLKAKNPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELR
AGSSVVGWDIPITYGVLPPPRESHTAVVYTEKTSRKSRLIIYGGMSGCRLGDLWTLDIDT
LTWNKPSVNGTAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACL
NLDGMCWETVLMDTLEDNIPRARAGHCAVAINSRLYVWSGRDGYRKAWNNQVCCKDLWYL
ETERPHSPARVQLVRANTNSLEVSWGAVSTADTYLLQLQKYDIPATPAAASPVMSASPVQ
PPKSPAPAAVALSAQSLTQTAVLKVAAQQSATGTSIVTVRPSQPGKSPVTVTTLPPGVRM
VVPTQTVQGSPIGSSPQMSGMAALAAAAAATQKIPPSSAGTILNVPAGATILKTVAISPG
TTTMKLASPLMVSNPATRMLKTAAAQVGIATQSSPTTTRPIITVHKSGAVTVAQQAQVVT
TVVGGVTKTITLVKSPLTMGSGGTLISNLGKMMSVVQTKPLQTALTGQGSHNPLAQLIQS
KGPLPAGTILKLVTSADGKPTTIITTSQAGGAGNKPTILNISSVSPTTTKQGTTIIKTIP
MSAIMGQAGAAGLNSRVTSSGMKTPITILTTKMMTSGTPGKIITAMPKLVTAAGQQGITQ
VVLKGAHGQPGTILRTVPMSTVGGVRLVQPMTVSAVKATVTTTVVKRTTGVATLGTVTGT
VSSSLAGAAVDSSNASLVTPITTLGTIATLSSQVISPAAITVSVAQTNLTAATTLPSSTM
TVQNQPTQVTLITTPSGVEAQPVQDLPVSILASPTSEQPSSTDAGAAGESSGTVTLVCSN
PPCETHETGTTNTATTSSAAMGAGQVCSNPPCETHETVTTNTATTSSAAMGAGQVCSNPP
CETHETGTTNTATTASSNMSAPRVCSNPPCETHETGTTNTPTTASANMGGNQQLCSNPPC
ETHETGTTNTATTSSAAMGAGQVCSNPPCETHVTATTNTATQSSSAAMNAGQTSTTQRAS
SNSRCETHETGTTNTPSTATSSMGSDQTNTATGQVQRVCSNPPCETHETGTTNTATTATC
SMETGEGAQQTEEGAEVTTSPEEAATTTTAAAAVVAAPAAPAAAAAPAAAAAPAAAAAPA
AAPAAPAAPAAPAPAAAPAAAAAPAAGMVTTVQGRAITTVTQSTPAPGPSVPSISSITEA
AATAAATAGSTEEPMQTEETASAEAAEEAVTAMETQAEGGAAAAAAATALNLPSELMSEG
QGATLMVTGLSEEELAVTAAAEAAAQAAEAAAQAAAIEEAQALAIQAVLQAAQQAVLNES
TGESQQPTSIPIMLTQQELAALVHQQQQLQLQEAQAAAQQASVDTSVPTEGLAPADSLND
PSVESNGHNEMAAAVTSAVASLLPRPTAETLAPSSTFAPSVSVATPAKPQAAAALADVAN
GIEGEKQAPQPTPVKPVAKKENQWFDVGIVKVTNMVVTHFYMPGDNSQGDDDTGAMPDYG
QMKKMELQPGTAYKFRVAGINACGRGAYSEISAFKTCLPGFPGAPCAIKISKSPDGAHLT
WEPPSVTSGKIIEYSVYLAIQSNQTAEAKASTPAQLAFMRVYCGPNPSCLVQSSSLSNAH
IDYTTKPAIIFRIAARNEKGYGPATQVRWLQESGKDAASAKPAAKRPGTSPDTKVAGPKK
ARTDQ
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcccctggctccgcggtgtctgggaccacggcggcggttctgcagccgcggtgg
aagcgggtcctcggatggtccggtcccgttccccggcccaggcatgggcaccgagctgtt
gctataaaagagctcatggttgtctttggcggtggaaacgaaggcattgtggatgaattg
catgtgtacaacactgcaacaaaccagtggtttatcccagcggtccgtggtgatattccc
cctggttgtgctgcatatggttttgtctgtgatggcaccagattgctggtgtttggggga
atggtggagtatggaaagtacagcaatgatctctatgagctacaggccagcagatgggaa
tggaaaaagttgaaagcaaaaaatccgaagaacggtccccctccttgccctcgtcttggt
cacagtttctcgctggttggcaacaagtgctacctgtttggtggactagccaatgacagc
gaagacccaaaaaacaacattcccagatacctgaatgatctgtacacacttgagcttcgc
gcgggctccagtgtggttggctgggatatcccaatcacatatggcgttctgccgccccct
cgtgagagccacactgctgttgtatacacagaaaagacgagcaggaaatcccgcctgata
atatacggaggaatgagtggctgtcgccttggagatctgtggacacttgatattgatacc
ctgacatggaacaaaccatcagtaaacgggacggcaccgctccccagaagtcttcactct
gccaccaccatcacaaacaaaatgtatgtttttggaggttgggttccgttggtcatggac
gacgtcaaagtggccacacacgagaaggagtggaagtgcaccaacactcttgcctgccta
aatctagacggcatgtgttgggagacggtgttgatggatacgcttgaagacaacatcccg
agggctcgtgctggccactgtgctgtggccatcaattctaggctgtatgtatggagcggc
cgggacggttatcgtaaagcttggaacaaccaagtctgttgtaaagacctctggtacctg
gaaacggagcggccacactcccctgccagggtccagttagtccgtgccaacacaaactct
cttgaggtgagctggggtgccgtctcaactgccgacacctacttactgcagctgcagaaa
tatgacatccctgcgactccagctgcagcctcgccagtcatgagtgccagccctgtgcag
cctccaaagagtcctgcaccggctgctgtagccctctctgctcagagcctaactcagaca
gctgtcttgaaggttgcagctcaacagtctgccacgggcacgtctattgtcacagtccgc
cccagccagcctggcaaatcccctgtcactgtgacaaccctcccaccaggtgttcgtatg
gtagtgcctacccagaccgtccaaggatcgccaattgggagtagccctcagatgagtggc
atggcagctttggctgcagcagctgcagcaacacagaagatcccgccctcttctgcaggc
actatcctcaatgttcctgcaggtgccaccattctcaaaacggtagccatttccccgggc
acgaccacaatgaaattggcttctccgctcatggtcagcaacccggccacccggatgctg
aaaactgcagcagcccaggtgggcatagcgactcagtcctctcccaccaccaccagacca
atcatcactgtgcacaagtctggtgcagtcacggtggcccagcaggcccaggtggtaacc
actgtggtgggaggagtcaccaagaccatcaccctggtcaagagtccactcaccatgggg
agcggcggcactctgatctccaaccttggcaagatgatgtctgtggtacaaaccaagcca
ttgcagacagccctcacaggccagggttcccataaccctctcgcgcagctcatacagtca
aagggtcccctcccagccggcaccatcctgaagctggtgacctccgccgatggcaagccc
acgaccatcatcaccacctcccaggctggaggcgcaggaaataagcccactatcctcaac
atcagcagcgtgtctccgaccaccactaagcagggcaccaccattatcaagacgatcccc
atgtccgccatcatgggccaggcaggagctgcaggcctaaactcacgtgtgacaagcagt
ggcatgaaaacgccaatcacaatcctcaccaccaagatgatgacctctggaactcctggt
aaaattatcactgccatgcccaaactggtcactgcagccggccaacaggggatcacacag
gtggttttgaagggtgctcacgggcaacctggaacgattttgcgcaccgtgcctatgagc
acagtcggtggcgttcgacttgtccaaccaatgaccgtatctgctgttaaggccactgtc
accaccacggttgtcaagaggactacgggtgtcgccactctcgggacggtcactggcacg
gtctcctcgagcctcgccggagccgcggtggacagttccaacgcctctctcgtcaccccc
atcaccaccctgggaaccatcgctaccctgtccagccaggtcatcagcccagctgccatc
accgtttcagttgctcagaccaacctgactgctgccaccacattgccctcctccaccatg
acggtgcaaaaccagcccacccaggtgactctgatcacaactcccagtggtgtagaagct
caaccagtgcaggatctaccggtgtccatcctggcttcaccgacctccgagcagcccagc
tccactgatgccggagcagccggagaaagctctgggaccgtcaccctggtctgctccaac
ccgccgtgcgagacccacgagacgggaaccaccaacacagccaccacctcctccgccgcg
atgggagcaggacaggtctgttccaacccgccgtgcgagacccacgaaacggtcaccacc
aacacggccaccacctcctccgccgcgatgggagcaggacaggtctgctccaacccgccg
tgcgagacccacgaaacgggcaccaccaacacggccacgaccgcgtcgtcaaacatgtct
gcgccgcgcgtgtgctctaacccgccgtgcgagacccacgaaaccgggacgactaacacg
cccaccacggcgtcggccaacatgggcggaaaccagcagctgtgctccaacccgccgtgc
gagacccacgagacgggaaccaccaacacggccaccacctcctccgccgcgatgggagca
ggacaggtctgttctaacccgccgtgcgagacccacgtgacggccaccaccaacacggcc
acccagtcgtcctccgccgccatgaacgcaggccagacgagcaccacgcagagggcgtcc
tccaactcgcgctgtgaaacacacgagacggggaccaccaacaccccgtccacagccacc
tccagcatgggcagcgaccagaccaacacggcaacgggccaagtccagagggtgtgctcc
aacccgccctgtgaaacgcacgaaactgggaccaccaacacggccaccactgccacctgc
agcatggagaccggcgaaggcgcccagcagacagaggagggggcagaagttaccaccagc
ccagaagaggccgccaccaccacaaccgctgctgctgcagtagtagcagcaccagcagca
ccagcagcagcagcagcaccagcagcagcagcagcaccagcagcagcagcagcaccagca
gcagcaccagcagcaccagcagcaccagcagcaccagcaccagcagcagcaccagcagca
gcagcagcaccagcagctggcatggttaccacggttcagggcagggccatcacaaccgtc
actcagtccacaccggcccccggaccctctgtaccttcgatctcgtcaatcacagaggcc
gccgccaccgccgccgccaccgccggctccacggaggagcccatgcagactgaggaaacg
gcatcagcggaagctgcagaggaagcagttaccgctatggaaacgcaagcagagggagga
gccgcagccgcagccgcagctacagccttgaatctaccctcggagctgatgtctgagggt
cagggtgccacgctcatggtgacggggctgtcggaggaggagctagctgtgaccgcggca
gccgaggccgccgctcaggcagccgaggccgccgctcaggcagcggccatcgaagaagcc
caagccctcgctatccaggccgtcctccaggcggcccagcaagcagtattgaatgagagc
actggagagagccagcagcccaccagcatccccatcatgttgacccagcaggagctcgct
gcgctggtccatcagcagcagcagctgcagctgcaggaggctcaggctgccgcgcagcag
gcctccgtggacaccagcgtgcccaccgagggcctcgcccccgccgacagcctcaacgac
ccctccgtggagagcaacgggcacaatgagatggccgcggccgtcaccagtgccgtggcg
tcactgctgccacgtcccacagctgagacacttgctccatcgagcacattcgcaccctct
gtatcggtggcgactccagccaagccgcaggcagcagccgctctagcggacgtcgccaac
gggatcgagggagagaagcaagcccctcagccgaccccagtgaagcctgttgcgaaaaaa
gagaaccagtggtttgatgttggaatagttaaagtgaccaacatggtggtcacccacttc
tacatgccgggagacaattctcaaggagatgatgacactggcgccatgccggactacgga
cagatgaagaaaatggagctgcagcccggcacggcttacaagttccgcgtggctgggatc
aacgcttgcggtcgcggcgcttactctgagatatctgctttcaagacttgcctacctggc
ttccccggggcaccttgtgccatcaaaatcagcaagagcccagacggcgcccacttgacc
tgggagccgccctcggtgacgtcgggcaagatcatcgagtactccgtgtacctggccatc
cagagcaaccagacggccgaggccaaggcctccaccccggcccagctggccttcatgcgc
gtgtactgtgggcccaacccctcttgcctggtgcagtcgtccagcctctccaacgcccac
atcgactacaccaccaagccggccatcatcttccgcattgctgcccgcaatgagaagggc
tacggccccgccacccaagtccggtggctgcaagaatctggcaaagatgccgcctctgca
aaaccggccgccaaaagacccggcacctcccccgatactaaggttgctggtccaaagaag
gcgaggacggaccagtga
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