KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130208328
Entry
130208328         CDS       T09868                                 
Symbol
hcfc1a
Name
(RefSeq) host cell factor 1a
  KO
K14966  host cell factor 1
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03083  Polycomb repressive complex
pswi04980  Cobalamin transport and metabolism
pswi05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    130208328 (hcfc1a)
 09150 Organismal Systems
  09154 Digestive system
   04980 Cobalamin transport and metabolism
    130208328 (hcfc1a)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    130208328 (hcfc1a)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:pswi01009]
    130208328 (hcfc1a)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pswi03036]
    130208328 (hcfc1a)
   03029 Mitochondrial biogenesis [BR:pswi03029]
    130208328 (hcfc1a)
Protein phosphatases and associated proteins [BR:pswi01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     130208328 (hcfc1a)
Chromosome and associated proteins [BR:pswi03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    NSL complex
     130208328 (hcfc1a)
   HMT complexes
    COMPASS/SET1 complex
     130208328 (hcfc1a)
    MLL-HCF complex
     130208328 (hcfc1a)
   Polycomb repressive complex (PRC) and associated proteins
    PR-DUB complex
     130208328 (hcfc1a)
Mitochondrial biogenesis [BR:pswi03029]
 Mitochondrial quality control factors
  Regulator of mitochondrial biogenesis
   Other regulator of mitochondrial biogenesis
    130208328 (hcfc1a)
SSDB
Motif
Pfam: Kelch_5 Kelch_3 Kelch_4 Kelch_1 Kelch_6 fn3
Other DBs
NCBI-GeneID: 130208328
NCBI-ProteinID: XP_056293348
LinkDB
Position
18:25534478..25548202
AA seq 1805 aa
MSAPGSAVSGTTAAVLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDEL
HVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWE
WKKLKAKNPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELR
AGSSVVGWDIPITYGVLPPPRESHTAVVYTEKTSRKSRLIIYGGMSGCRLGDLWTLDIDT
LTWNKPSVNGTAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACL
NLDGMCWETVLMDTLEDNIPRARAGHCAVAINSRLYVWSGRDGYRKAWNNQVCCKDLWYL
ETERPHSPARVQLVRANTNSLEVSWGAVSTADTYLLQLQKYDIPATPAAASPVMSASPVQ
PPKSPAPAAVALSAQSLTQTAVLKVAAQQSATGTSIVTVRPSQPGKSPVTVTTLPPGVRM
VVPTQTVQGSPIGSSPQMSGMAALAAAAAATQKIPPSSAGTILNVPAGATILKTVAISPG
TTTMKLASPLMVSNPATRMLKTAAAQVGIATQSSPTTTRPIITVHKSGAVTVAQQAQVVT
TVVGGVTKTITLVKSPLTMGSGGTLISNLGKMMSVVQTKPLQTALTGQGSHNPLAQLIQS
KGPLPAGTILKLVTSADGKPTTIITTSQAGGAGNKPTILNISSVSPTTTKQGTTIIKTIP
MSAIMGQAGAAGLNSRVTSSGMKTPITILTTKMMTSGTPGKIITAMPKLVTAAGQQGITQ
VVLKGAHGQPGTILRTVPMSTVGGVRLVQPMTVSAVKATVTTTVVKRTTGVATLGTVTGT
VSSSLAGAAVDSSNASLVTPITTLGTIATLSSQVISPAAITVSVAQTNLTAATTLPSSTM
TVQNQPTQVTLITTPSGVEAQPVQDLPVSILASPTSEQPSSTDAGAAGESSGTVTLVCSN
PPCETHETGTTNTATTSSAAMGAGQVCSNPPCETHETVTTNTATTSSAAMGAGQVCSNPP
CETHETGTTNTATTASSNMSAPRVCSNPPCETHETGTTNTPTTASANMGGNQQLCSNPPC
ETHETGTTNTATTSSAAMGAGQVCSNPPCETHVTATTNTATQSSSAAMNAGQTSTTQRAS
SNSRCETHETGTTNTPSTATSSMGSDQTNTATGQVQRVCSNPPCETHETGTTNTATTATC
SMETGEGAQQTEEGAEVTTSPEEAATTTTAAAAVVAAPAAPAAAAAPAAAAAPAAAAAPA
AAPAAPAAPAAPAPAAAPAAAAAPAAGMVTTVQGRAITTVTQSTPAPGPSVPSISSITEA
AATAAATAGSTEEPMQTEETASAEAAEEAVTAMETQAEGGAAAAAAATALNLPSELMSEG
QGATLMVTGLSEEELAVTAAAEAAAQAAEAAAQAAAIEEAQALAIQAVLQAAQQAVLNES
TGESQQPTSIPIMLTQQELAALVHQQQQLQLQEAQAAAQQASVDTSVPTEGLAPADSLND
PSVESNGHNEMAAAVTSAVASLLPRPTAETLAPSSTFAPSVSVATPAKPQAAAALADVAN
GIEGEKQAPQPTPVKPVAKKENQWFDVGIVKVTNMVVTHFYMPGDNSQGDDDTGAMPDYG
QMKKMELQPGTAYKFRVAGINACGRGAYSEISAFKTCLPGFPGAPCAIKISKSPDGAHLT
WEPPSVTSGKIIEYSVYLAIQSNQTAEAKASTPAQLAFMRVYCGPNPSCLVQSSSLSNAH
IDYTTKPAIIFRIAARNEKGYGPATQVRWLQESGKDAASAKPAAKRPGTSPDTKVAGPKK
ARTDQ
NT seq 5418 nt   +upstreamnt  +downstreamnt
atgtctgcccctggctccgcggtgtctgggaccacggcggcggttctgcagccgcggtgg
aagcgggtcctcggatggtccggtcccgttccccggcccaggcatgggcaccgagctgtt
gctataaaagagctcatggttgtctttggcggtggaaacgaaggcattgtggatgaattg
catgtgtacaacactgcaacaaaccagtggtttatcccagcggtccgtggtgatattccc
cctggttgtgctgcatatggttttgtctgtgatggcaccagattgctggtgtttggggga
atggtggagtatggaaagtacagcaatgatctctatgagctacaggccagcagatgggaa
tggaaaaagttgaaagcaaaaaatccgaagaacggtccccctccttgccctcgtcttggt
cacagtttctcgctggttggcaacaagtgctacctgtttggtggactagccaatgacagc
gaagacccaaaaaacaacattcccagatacctgaatgatctgtacacacttgagcttcgc
gcgggctccagtgtggttggctgggatatcccaatcacatatggcgttctgccgccccct
cgtgagagccacactgctgttgtatacacagaaaagacgagcaggaaatcccgcctgata
atatacggaggaatgagtggctgtcgccttggagatctgtggacacttgatattgatacc
ctgacatggaacaaaccatcagtaaacgggacggcaccgctccccagaagtcttcactct
gccaccaccatcacaaacaaaatgtatgtttttggaggttgggttccgttggtcatggac
gacgtcaaagtggccacacacgagaaggagtggaagtgcaccaacactcttgcctgccta
aatctagacggcatgtgttgggagacggtgttgatggatacgcttgaagacaacatcccg
agggctcgtgctggccactgtgctgtggccatcaattctaggctgtatgtatggagcggc
cgggacggttatcgtaaagcttggaacaaccaagtctgttgtaaagacctctggtacctg
gaaacggagcggccacactcccctgccagggtccagttagtccgtgccaacacaaactct
cttgaggtgagctggggtgccgtctcaactgccgacacctacttactgcagctgcagaaa
tatgacatccctgcgactccagctgcagcctcgccagtcatgagtgccagccctgtgcag
cctccaaagagtcctgcaccggctgctgtagccctctctgctcagagcctaactcagaca
gctgtcttgaaggttgcagctcaacagtctgccacgggcacgtctattgtcacagtccgc
cccagccagcctggcaaatcccctgtcactgtgacaaccctcccaccaggtgttcgtatg
gtagtgcctacccagaccgtccaaggatcgccaattgggagtagccctcagatgagtggc
atggcagctttggctgcagcagctgcagcaacacagaagatcccgccctcttctgcaggc
actatcctcaatgttcctgcaggtgccaccattctcaaaacggtagccatttccccgggc
acgaccacaatgaaattggcttctccgctcatggtcagcaacccggccacccggatgctg
aaaactgcagcagcccaggtgggcatagcgactcagtcctctcccaccaccaccagacca
atcatcactgtgcacaagtctggtgcagtcacggtggcccagcaggcccaggtggtaacc
actgtggtgggaggagtcaccaagaccatcaccctggtcaagagtccactcaccatgggg
agcggcggcactctgatctccaaccttggcaagatgatgtctgtggtacaaaccaagcca
ttgcagacagccctcacaggccagggttcccataaccctctcgcgcagctcatacagtca
aagggtcccctcccagccggcaccatcctgaagctggtgacctccgccgatggcaagccc
acgaccatcatcaccacctcccaggctggaggcgcaggaaataagcccactatcctcaac
atcagcagcgtgtctccgaccaccactaagcagggcaccaccattatcaagacgatcccc
atgtccgccatcatgggccaggcaggagctgcaggcctaaactcacgtgtgacaagcagt
ggcatgaaaacgccaatcacaatcctcaccaccaagatgatgacctctggaactcctggt
aaaattatcactgccatgcccaaactggtcactgcagccggccaacaggggatcacacag
gtggttttgaagggtgctcacgggcaacctggaacgattttgcgcaccgtgcctatgagc
acagtcggtggcgttcgacttgtccaaccaatgaccgtatctgctgttaaggccactgtc
accaccacggttgtcaagaggactacgggtgtcgccactctcgggacggtcactggcacg
gtctcctcgagcctcgccggagccgcggtggacagttccaacgcctctctcgtcaccccc
atcaccaccctgggaaccatcgctaccctgtccagccaggtcatcagcccagctgccatc
accgtttcagttgctcagaccaacctgactgctgccaccacattgccctcctccaccatg
acggtgcaaaaccagcccacccaggtgactctgatcacaactcccagtggtgtagaagct
caaccagtgcaggatctaccggtgtccatcctggcttcaccgacctccgagcagcccagc
tccactgatgccggagcagccggagaaagctctgggaccgtcaccctggtctgctccaac
ccgccgtgcgagacccacgagacgggaaccaccaacacagccaccacctcctccgccgcg
atgggagcaggacaggtctgttccaacccgccgtgcgagacccacgaaacggtcaccacc
aacacggccaccacctcctccgccgcgatgggagcaggacaggtctgctccaacccgccg
tgcgagacccacgaaacgggcaccaccaacacggccacgaccgcgtcgtcaaacatgtct
gcgccgcgcgtgtgctctaacccgccgtgcgagacccacgaaaccgggacgactaacacg
cccaccacggcgtcggccaacatgggcggaaaccagcagctgtgctccaacccgccgtgc
gagacccacgagacgggaaccaccaacacggccaccacctcctccgccgcgatgggagca
ggacaggtctgttctaacccgccgtgcgagacccacgtgacggccaccaccaacacggcc
acccagtcgtcctccgccgccatgaacgcaggccagacgagcaccacgcagagggcgtcc
tccaactcgcgctgtgaaacacacgagacggggaccaccaacaccccgtccacagccacc
tccagcatgggcagcgaccagaccaacacggcaacgggccaagtccagagggtgtgctcc
aacccgccctgtgaaacgcacgaaactgggaccaccaacacggccaccactgccacctgc
agcatggagaccggcgaaggcgcccagcagacagaggagggggcagaagttaccaccagc
ccagaagaggccgccaccaccacaaccgctgctgctgcagtagtagcagcaccagcagca
ccagcagcagcagcagcaccagcagcagcagcagcaccagcagcagcagcagcaccagca
gcagcaccagcagcaccagcagcaccagcagcaccagcaccagcagcagcaccagcagca
gcagcagcaccagcagctggcatggttaccacggttcagggcagggccatcacaaccgtc
actcagtccacaccggcccccggaccctctgtaccttcgatctcgtcaatcacagaggcc
gccgccaccgccgccgccaccgccggctccacggaggagcccatgcagactgaggaaacg
gcatcagcggaagctgcagaggaagcagttaccgctatggaaacgcaagcagagggagga
gccgcagccgcagccgcagctacagccttgaatctaccctcggagctgatgtctgagggt
cagggtgccacgctcatggtgacggggctgtcggaggaggagctagctgtgaccgcggca
gccgaggccgccgctcaggcagccgaggccgccgctcaggcagcggccatcgaagaagcc
caagccctcgctatccaggccgtcctccaggcggcccagcaagcagtattgaatgagagc
actggagagagccagcagcccaccagcatccccatcatgttgacccagcaggagctcgct
gcgctggtccatcagcagcagcagctgcagctgcaggaggctcaggctgccgcgcagcag
gcctccgtggacaccagcgtgcccaccgagggcctcgcccccgccgacagcctcaacgac
ccctccgtggagagcaacgggcacaatgagatggccgcggccgtcaccagtgccgtggcg
tcactgctgccacgtcccacagctgagacacttgctccatcgagcacattcgcaccctct
gtatcggtggcgactccagccaagccgcaggcagcagccgctctagcggacgtcgccaac
gggatcgagggagagaagcaagcccctcagccgaccccagtgaagcctgttgcgaaaaaa
gagaaccagtggtttgatgttggaatagttaaagtgaccaacatggtggtcacccacttc
tacatgccgggagacaattctcaaggagatgatgacactggcgccatgccggactacgga
cagatgaagaaaatggagctgcagcccggcacggcttacaagttccgcgtggctgggatc
aacgcttgcggtcgcggcgcttactctgagatatctgctttcaagacttgcctacctggc
ttccccggggcaccttgtgccatcaaaatcagcaagagcccagacggcgcccacttgacc
tgggagccgccctcggtgacgtcgggcaagatcatcgagtactccgtgtacctggccatc
cagagcaaccagacggccgaggccaaggcctccaccccggcccagctggccttcatgcgc
gtgtactgtgggcccaacccctcttgcctggtgcagtcgtccagcctctccaacgcccac
atcgactacaccaccaagccggccatcatcttccgcattgctgcccgcaatgagaagggc
tacggccccgccacccaagtccggtggctgcaagaatctggcaaagatgccgcctctgca
aaaccggccgccaaaagacccggcacctcccccgatactaaggttgctggtccaaagaag
gcgaggacggaccagtga

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