Pseudoliparis swirei (Mariana hadal snailfish): 130208347
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Entry
130208347 CDS
T09868
Symbol
ccdc174
Name
(RefSeq) coiled-coil domain-containing protein 174
KO
K25178
coiled-coil domain-containing protein 174
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130208347 (ccdc174)
03041 Spliceosome [BR:
pswi03041
]
130208347 (ccdc174)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130208347 (ccdc174)
Spliceosome [BR:
pswi03041
]
Complex C
Other components
EJC/TREX
130208347 (ccdc174)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4078
EssA
Motif
Other DBs
NCBI-GeneID:
130208347
NCBI-ProteinID:
XP_056293390
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All DBs
Position
18:complement(16442594..16448300)
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AA seq
676 aa
AA seq
DB search
MDRKKPFAVTASSLVDLKAELFRKQEQFKHEKLGHEHSGARFTPKPQIKKPNVWIKQNAG
VSARAEKDAEQLAEEQKSLDASKRKLEEKAILYDQMIKGDFPDEETEGLFLVDFTQKIID
QKREMHGQKKTERDDEERHNSSPVPPPQNSEEEWVDYVDALGRSRRCMKKDLPGFKKMDQ
DFQGKEKASADKTLLSEDMRRELQRQEWEREEEEAMKRPVGPLHYEDIRGQEARDLGVGY
FAFAQDEEQRKKQRDTLDMLRDQTTDQRTKREQLKDKRQAILRARLTKVRQRKMKKAKLD
GTEDEQREEENDGRDDEGEIIGPPEDSPEVSTVKKVIVEIQERKDTKPGVPHVREWDRGK
EFMFTEWTNRRREERESDFAPPSAYFSEWKRAGPGKIRAQENKSKMAFQWTKAPEGVSES
KEEEPQSQPNTAPPPPSPPPPQQNLSPPSQPQTSSQLSPSDLSADSAPASAPPLNPQYNP
SCYPMFPSPQFAGPHHQPPFFPQQYPDQYPPQYQPEYQLQYQLQYQPQYPPQYPSHYSPQ
YPPQYQPQYPPQYQPQYQPQYPPQYQPQYPPQYQPQYPPQAQAQAQPQTQTQTQAQPQPQ
AQPQAQAQPQPQTQPQAQPQPQAQTQPQTQAQTQPQAQAQTQAQAQAQAQQPEDVSQARQ
PTESLDDMLSFYRSST
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggatagaaagaaacccttcgccgtgactgcttcatcgctggtggacctgaaagctgag
ttgttcagaaagcaggaacaattcaaacacgaaaaacttgggcatgaacattctggtgct
agattcaccccaaaaccccaaatcaagaaacctaatgtctggattaaacaaaacgctggt
gtttctgcaagagctgagaaagatgcggagcagctggctgaggagcagaaaagcctcgac
gcatccaaacgcaagttggaggaaaaggccatactctatgaccaaatgatcaaaggagac
tttccagatgaagagacagaggggctgttcctggttgatttcacccagaagataattgac
caaaagagggaaatgcatgggcagaagaaaacagaaagagacgatgaggaaagacacaac
tcttctcctgtccctccccctcaaaactcggaagaggaatgggtggattatgtggacgct
ttgggccgatctcggagatgcatgaagaaagacctgccaggttttaagaaaatggaccaa
gactttcagggaaaagaaaaagcttcagctgataagaccttactctctgaggacatgcgt
cgagagctgcagaggcaggagtgggagagggaggaagaggaggctatgaagaggcctgta
ggaccgctccactacgaggacattaggggacaagaggctcgagatctcggtgtaggttac
tttgcgttcgctcaggatgaagagcagcgcaaaaagcagagagacactttagacatgctg
agagaccagacaacagatcagcgcaccaagagggaacaactgaaggacaagaggcaggcc
atcctgcgggcccggttgaccaaagtgagacagagaaagatgaagaaggccaagctggat
ggcactgaggatgagcagagagaggaggagaatgacggacgagatgacgaaggagaaatt
ataggaccgccagaggactccccagaagtgagcacagtgaagaaggtgatagtggagatc
caggaaaggaaggacaccaaaccaggagtccctcatgtccgagaatgggaccgaggcaaa
gagtttatgtttaccgagtggacaaatcgccgtcgcgaagaacgagagtccgactttgca
cctccctctgcgtacttctctgagtggaagagagcaggacctgggaagattagagctcag
gagaataaatccaagatggcctttcagtggaccaaagccccagaaggagtctctgaaagc
aaggaggaagaaccacaatctcagcctaacacggctccaccacctccttcacctcctcct
cctcaacaaaatctttcacctccttcacaaccacagacttcatcgcagttatcaccttca
gatctctcggcagattcagctcctgcatctgctcctcctcttaatccccagtacaaccct
tcatgttatcctatgtttccttctcctcagtttgctggaccacatcaccagcctcctttc
tttccccaacaatacccagaccagtatcccccccagtatcaacccgagtatcaactccag
tatcaactccagtatcaaccccagtatccaccccagtatccatctcactattcaccccag
tatcccccccagtatcaaccccagtatcccccccagtatcaaccccagtatcaaccccag
tatcccccccagtatcaaccccagtatcccccccagtatcaaccccagtatccccctcag
gctcaggctcaggctcagcctcagactcagactcagactcaggctcagcctcaacctcag
gctcaacctcaggctcaggctcagcctcaacctcagactcagcctcaggctcaacctcaa
cctcaggctcagactcagcctcagactcaggctcagactcagcctcaggctcaggctcag
actcaggctcaggctcaggctcaggctcagcagcctgaagacgtcagccaggccagacag
ccgacggagagtctggacgacatgctgtcgttctacaggagctcaacctaa
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