KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130208354
Entry
130208354         CDS       T09868                                 
Symbol
rae1
Name
(RefSeq) mRNA export factor isoform X1
  KO
K14298  mRNA export factor
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    130208354 (rae1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pswi03019]
    130208354 (rae1)
   03036 Chromosome and associated proteins [BR:pswi03036]
    130208354 (rae1)
Messenger RNA biogenesis [BR:pswi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     130208354 (rae1)
Chromosome and associated proteins [BR:pswi03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    130208354 (rae1)
SSDB
Motif
Pfam: WD40 Beta-prop_EML_2 WDR55 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WD40_RFWD3 ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_EIPR1 NBCH_WD40 Beta-prop_HPS5 Beta-prop_Nup120_160 WDR90_beta-prop_4th Beta-prop_SPT8 B-prop_COPA_B_2nd Exonuc_X-T_C
Other DBs
NCBI-GeneID: 130208354
NCBI-ProteinID: XP_056293403
LinkDB
Position
18:26399228..26404646
AA seq 370 aa
MMSLFGATSGFGAAGAGVFGNATTDSHNPMKDVEVTSPPDDSISCLAFSPPSMPGNFLIG
GSWANDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSDDGSKVFTASSDKTAKMWDLNSNQ
AMQIAQHDGPIKSIHWIKAPNYSCIMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVV
YPMAVVATADRGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGR
VAIHYINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVGSDGRFSF
WDKDARTKLKTSEQLDQPITACCFNSNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAA
EELKPRNKKW
NT seq 1113 nt   +upstreamnt  +downstreamnt
atgatgagtttatttggggcgacctctgggttcggagcagcgggggccggtgtctttgga
aacgcaacaacagacagccacaatcccatgaaggatgtggaagtgacttcccctccagat
gacagcatcagctgtctggctttcagccccccctccatgccggggaacttcctcatcgga
ggatcctgggccaacgatgtccggtgctgggaggttcaggacaatgggcagacggtcccc
aaagcccagcagatgcacacgggtccagtgctggatgtatgctggagtgacgatgggagt
aaagtcttcactgcttcctctgacaaaacagccaagatgtgggatcttaacagcaatcaa
gctatgcagattgcacagcatgatggtccgattaagtcaatccactggatcaaagccccg
aactacagctgcatcatgaccggcagttgggacaaaacactgaagttctgggacacccgg
tctcccaaccccatgatgtctctgcagatgccagagagatgctactgtgcagatgttgtg
taccccatggctgtggttgccacggcggacagaggcctcatcgtgtaccagctggagaac
cagccctctgagtttcgcagaatagactctcctctcaaacatcagcaccgatgtgttgcc
atattcaaggacaagcagaacaagcccactggctttgccctggggagcattgagggccga
gtggccatccactacatcaaccctccaaacccagccaaagacaacttcaccttcaagtgc
caccggtcgaatggaaccaacacagccactccacaggacatctacgctgtcaacgccatc
tctttccatcccgtccacggcacactggcgaccgtgggctcagacggacgcttcagcttc
tgggacaaagacgcccgcaccaagctgaagacctcggagcagctcgaccagccaatcaca
gcctgctgcttcaacagcaacggcaacatcttcgcatacgcctccagctacgactggtca
aagggccacgagtactacaacccccagaaaaagaactacatcttcttgaggaacgctgcc
gaggagctgaagcctcggaacaagaaatggtga

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