Pseudoliparis swirei (Mariana hadal snailfish): 130208458
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Entry
130208458 CDS
T09868
Symbol
chl1b
Name
(RefSeq) neural cell adhesion molecule L1-like protein
KO
K06758
L1 cell adhesion molecule like protein
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130208458 (chl1b)
Cell adhesion molecules [BR:
pswi04515
]
Immunoglobulin superfamily
L1 family
130208458 (chl1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
fn3
ig
Bravo_FIGEY
V-set
C2-set_2
FN3_DSCAM-DSCAML_C
Ig_PDGFR_d4
Ig_6
Motif
Other DBs
NCBI-GeneID:
130208458
NCBI-ProteinID:
XP_056293582
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All DBs
Position
18:complement(23960417..24026974)
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AA seq
1164 aa
AA seq
DB search
MRSQQRSPGSGAVLGLVACVCAFYATTAFDIPLEVEQLPTITAQSPSSLIAFPFDESFPM
TCEAKGNPEPKYRWTKNGQEFDPSLDPRLMKEENSGTFVIPNNGNLTEYQGTYRCYASNK
LGTAISKEIEFIVPHVPKFPKETLEPIVVEEGQPFVLQCNPPRGIPPLQIYWMTINLQHI
EQDERVSMGLNGDLYFSHAVDKDSRRDYCCFAAFPRIRTIVQKTAMSVVVKTKNSGASPD
TANAILERRPSLLVPPGGNSETRLIKGEDLKWECIAEGFPTPQVEWVKLGRQLPVKAKLE
NHGKLLIVPRVDQEDDGKYMCKAKNALGEVLHYFTLMVEEPPEWVAEPESQLRMIGSDVL
IKCSADGTPRPTMTWRVNGEPLQGAPAANRKVLDDTIVLHNAKASDSAVYQCEASNKHGT
LLSNANIMIMNLAPMILTEEGKDYYAVQGKGAMMHCSVFSSPPSTITWSKVDSPESVEGP
RFAVHDNGSLEIDGAEKDDAGQFTCVAKNTEGSSAVDATLYVKDPTRVVAAQEDQQILKG
AAAQLSCLVDYDKSFSDDFELRWEKDDVAIGLNHTENPRHIVQDGFLQILNVSHGDQGVY
TCVAITPVDRDAASTLLMVLDVPDAPEYLVLSEHKSKSVKLKWIPGDDHNSSTTEFIVEY
EESQWEPGNWRELLRVPGDRNQAVPKLHGHVDYRFRVSAVNAVGRGRPSEHTERYKPPAA
APDKNPENIRIEGHFPHEMNINWEPLLPIERNGPGLEYKVSYRRQDVEDDAWKEEVVERH
SFVVKNTPTFVPYEIKIQARNNEGWGPKPMIVRGYSGEDFPSAAPDNVAVKVVNSSVVNV
NWTRVHEDKLHGRLGGYRVNWWRLRSLTNSKRIRGDGHTLAFPGDRGHGTVPGLMPFSEY
SLVVMTFNGRGDGPGSHPLEFKTPQGAPERNPVFRVTDVQRHTVSLLWAPPSEPNGILTG
YLLEYQLINDTEDVGPLQPVDISNPNTTKWTLRDLEPLSQYKLYLRSCTVVGCGPAVSEE
CTTTLETSLASVHRGVSTQGWFIGLMCAIALLTLIVLIACFVNRNKGGKYSVKEKEDLHP
DVESQGMNDDTFCEYSDNDEKPLKGSQRSLSRQIKAGGSEDSLVDYGDEDAQFNEDGSFI
GEYAGRKERKRASAEIKASVQTPA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgaggtcgcagcagaggagcccgggatcgggggccgtgctgggcttggtcgcctgcgtt
tgtgccttttacgcaacgacagccttcgacatcccgctggaggttgagcagctgcccacc
atcacggcgcagtcgcccagctccctcatcgccttcccgtttgacgaaagcttccccatg
acgtgcgaagccaaagggaaccccgagccaaaataccggtggacgaagaatggccaggaa
ttcgacccctctctagacccccggctgatgaaagaggagaattctgggacctttgtgata
cccaataatgggaacctcacagagtaccagggaacctatcgctgttacgcctcaaacaag
ctggggaccgccatatcgaaggagattgagttcattgtgccccatgttccgaagtttccg
aaagaaacacttgagcccatcgtggtggaggaaggccagccgtttgtgttacagtgtaat
ccacctcgaggaatacctcccctccagatctactggatgactatcaacctgcagcacatc
gagcaggacgagagggtctccatgggcctcaacggagacctgtacttctctcacgccgtg
gacaaggacagccggagggactactgctgcttcgccgccttccccaggatacgcaccatc
gttcagaagaccgccatgtccgtcgtggtgaagacgaaaaacagcggcgcgagtcccgac
accgcgaatgcgatcctcgagagaagaccctctcttctggtgccccctggtggcaattca
gagacacggctgatcaaaggagaggacctgaaatgggaatgtattgccgaaggatttcca
actccgcaggtggagtgggtgaagctgggtcgtcagctccccgtcaaagccaaactggag
aatcacggaaagctgctgattgtgccgagggtggaccaggaggacgacgggaagtacatg
tgcaaggcgaagaacgcgctgggagaagtcctccactacttcacgctgatggtggaagag
cctccggagtgggtggcagagcccgagagtcagctccgtatgatcggctccgacgtgctc
atcaagtgctccgccgacgggaccccccggcccacgatgacgtggcgggtgaacggcgaa
cctctgcagggggcccctgcagccaacaggaaggtgcttgacgacaccatcgtgctgcac
aacgccaaagcgtccgacagcgccgtctatcagtgcgaggcctccaacaagcacggcacc
ctcctgtcgaacgccaacatcatgatcatgaatttggcccccatgattctcaccgaggag
gggaaggactactacgcggtgcaggggaagggagcgatgatgcactgctcggtcttcagc
tctccgccttccaccatcacctggagcaaagtcgactcccccgaatccgtggaggggccg
aggttcgccgtgcacgacaacggctcgctggagatcgacggcgccgagaaggacgacgcg
ggtcagttcacgtgcgtggccaaaaacaccgagggctcgtccgccgtcgacgccacgctc
tacgtgaaagatcccaccagagtggtggcggcgcaggaggaccagcagatcctcaaaggt
gccgcggcccagctctcgtgcctcgtggactacgacaagtccttcagcgacgactttgag
ctccggtgggaaaaagacgacgtggcgataggcctcaaccacacggagaatcccagacac
attgtgcaggacggtttcctgcagatcctcaacgtgagccacggggaccagggcgtgtac
acgtgcgtggcgataaccccggtggaccgcgacgcggcctcgacgctgctcatggtgctg
gatgtccccgatgcacccgagtacttggtactgtcggagcacaagagcaaaagtgtgaaa
ctgaaatggatccctggggacgaccacaacagctccaccacagagttcatcgtcgagtac
gaggagagccagtgggagccggggaactggagggagctgctccgcgtgccgggcgaccgc
aaccaggctgtgcccaaactccacggccacgtggactaccgcttccgcgtgtccgccgtc
aacgccgtggggaggggtcgccccagcgagcacacggagagatacaaacccccggcggca
gcccctgacaagaacccagaaaatataagaatcgaaggtcattttccacatgaaatgaat
atcaactgggagcccttgctgcccattgagcgcaatgggcccggtttggagtacaaggtg
agctacaggaggcaggacgtggaggacgacgcctggaaggaggaggtggtggagagacac
tcgttcgtggtgaagaacacgccgacctttgtgccgtacgagattaagatccaagccagg
aacaacgagggctggggccccaagccgatgatagtgaggggctactctggggaggacttc
ccctccgctgcgcccgacaacgtcgccgtgaaggtggtgaacagctccgtggtcaacgtc
aactggacgcgcgttcacgaggacaagttacacggacgcctgggcggctacagggtgaac
tggtggcgcctgcgcagtctgacgaactcgaagagaatccgcggggacgggcacacgctg
gcgttccccggggaccgcggccacggcacggtgccggggctgatgcccttctccgagtac
agcctcgtcgtcatgaccttcaacgggcggggcgacggccccggcagccaccccctcgag
ttcaaaaccccgcagggagcccctgagagaaatccggttttcagggtcacggatgtccag
aggcacaccgtctctctgctgtgggccccgccatcggagcccaatgggattctcaccggg
tacctcctcgagtatcagctcatcaacgacacggaggacgtggggccgctgcagccggtg
gacatcagcaaccccaacaccaccaagtggaccctgcgcgacctggagcccctgagccaa
tacaagctctacctgcgctcctgcaccgtcgtgggctgcgggcccgccgtcagcgaggag
tgcaccaccaccctcgaaacaagtctggcgagcgtccaccgaggagtgtccacccagggc
tggttcatcggcctgatgtgcgccatcgctctcctcactctcattgtgctgatcgcctgc
tttgtcaacagaaataaaggggggaagtattccgtgaaagaaaaagaggaccttcaccca
gacgtggagtcccagggcatgaatgacgacacattttgtgaatacagcgacaacgacgag
aagccgctgaagggcagccagcgctcgctgagccgacagatcaaagccggcggcagcgag
gacagcctggtggactacggcgacgaggacgcccagttcaacgaggacggctccttcatc
ggcgagtacgcgggccggaaggagaggaagagggcgtccgccgagatcaaggcctccgtt
cagacgccggcgtga
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