Pseudoliparis swirei (Mariana hadal snailfish): 130208465
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Entry
130208465 CDS
T09868
Symbol
rbck1
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1
KO
K10630
RanBP-type and C3HC4-type zinc finger-containing protein 1 [EC:
2.3.2.31
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04217
Necroptosis
pswi04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
130208465 (rbck1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
130208465 (rbck1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130208465 (rbck1)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
130208465 (rbck1)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
130208465 (rbck1)
Multi subunit type E3
LUBAC complex
130208465 (rbck1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-RING_5
Zn_ribbon_RanBP
zf-RING_2
zf-C3HC4
zf-C3HC4_2
ubiquitin
IBR
zf-C3HC4_4
IBR_1
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
130208465
NCBI-ProteinID:
XP_056293591
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Position
18:complement(9138240..9146822)
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AA seq
520 aa
AA seq
DB search
MASEVTPGVDVKEAEELALSLSEALNSGDEQEAVQLCQRLSQLSVPVTVSVTSKAYLQDS
IRLRVGVEDGQSDVAIPVIVVVSSGMTIAQLKDKVNQDYGFPPPLQRWVIGKRLAGDQET
LHSHGVRRDGDQAFLFIPSANTTHLTLRQHKQDEEQQRLDGIIEAMQLLPRGLGRGGGGG
GGEKTAAPPDSQHFLPAPPPKPALQPKPQLGWPCAVCTFVNKPTRPGCEMCGGDRPEDYQ
VPDVYQPDKEEVHRLRQETLATLQYEQAQQEERHNNFLHLLATEEPSLFPNATATDCPIC
FSAIPAQQGVVLRECLHTFCRDCLKATIVNSQDAEVSCPEACDSKLLDREINALLTDEER
QRFQDLRLSIAESRSEHSFHCQTPNCRGWCIYEDEVNQFLCALCDETNCILCRAIHNDMN
CKDYQDDLRTRAMNDQAAQQTEQMLESLLKNGEAMKCPRCNIVIQKKDGCDWICCLMCKT
EVCWVTKQARWGPNGSGDTSGGCRCRVNNQPCHPNCQNCH
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggcctctgaagtgacaccgggagtcgatgtgaaagaggccgaagaactggcgctctcc
ctgagcgaagccctcaacagcggggacgaacaggaagccgtccagctttgccagagactg
tcccaactctccgtcccggtgaccgtcagcgtcaccagtaaggcctacctccaggactcc
atcaggttgcgggtcggagtggaggacggtcagtccgacgtcgcgatccccgtgattgtt
gtggtttcctccggcatgacaatcgcacaacttaaagacaaggtcaaccaggattacggg
ttcccgcccccgctgcagcgctgggtgatcggcaagcggctggccggcgaccaggagacg
ctgcacagccacggcgtccgtcgggatggagaccaggcgttcctcttcatcccttctgca
aacaccactcacctcacactgcggcaacacaagcaggacgaggagcagcagcgcctcgac
ggcatcatcgaggccatgcagctgttgcccagagggctgggcagaggaggaggaggagga
ggtggtgagaagacagctgctcctcctgattctcaacactttctccccgcccctcctcct
aaacctgcgttgcagcctaaacctcagttgggctggccctgcgccgtctgtacgttcgtg
aacaaaccgacgcgccccggctgtgagatgtgtggaggagatcggccagaggattatcag
gtgccggacgtctaccagccggacaaggaggaggttcatcgcctccggcaggagaccctg
gccacgttgcaatacgaacaggctcagcaggaggaacgacataacaacttcctgcatctg
ttggccaccgaagagccgagccttttccccaacgccacggcgaccgactgtccgatctgc
ttctctgccatcccggcccagcagggcgtcgtgctccgagagtgtctgcacaccttctgc
agggactgtctcaaagcgacgatagtgaacagtcaagacgccgaggtgtcctgtccggag
gcttgtgacagcaagctgctggaccgagagatcaatgcgctgctcacggacgaggagcgc
cagcgcttccaggacctgcgtctgagcatcgcagagagccgctcggagcacagcttccac
tgccagacgcccaactgtcgaggctggtgcatctacgaggacgaggtcaaccaattcctc
tgtgccctctgcgacgagaccaactgcatcctctgcagggccatccacaatgacatgaac
tgcaaggactaccaggatgacctgcgcacacgagcaatgaacgaccaggcggcccagcag
acggagcagatgctcgagagcctccttaagaacggggaggccatgaaatgcccacgctgt
aacatcgtcatccagaagaaagacggctgcgactggatctgctgtttgatgtgcaagacg
gaagtctgctgggtcaccaagcaagctcgctggggaccaaatggcagcggcgacacatct
gggggctgcagatgccgagtgaataaccagccgtgccatcccaactgccaaaattgccac
tga
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