Pseudoliparis swirei (Mariana hadal snailfish): 130208537
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Entry
130208537 CDS
T09868
Symbol
nfasca
Name
(RefSeq) neurofascin homolog (chicken) a
KO
K06757
neurofascin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
130208537 (nfasca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130208537 (nfasca)
Cell adhesion molecules [BR:
pswi04515
]
Immunoglobulin superfamily
L1 family
130208537 (nfasca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
Bravo_FIGEY
V-set
Ig_DSCAM-DSCAML_C
Ig_VEGFR-1-like_5th
Pur_ac_phosph_N
BiPBP_C
DUF3792
Motif
Other DBs
NCBI-GeneID:
130208537
NCBI-ProteinID:
XP_056293696
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All DBs
Position
18:20207184..20265094
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AA seq
1165 aa
AA seq
DB search
MSFVLLLLHEAAAIEVPQDPKILQELKQPPTIVKQSVKDYIVDPRDNIIIECEAKGNPVP
TFSWRRNGKFFNIGKDPRVTMRKRSGTLEIGFRSGGRPEDYEGEYQCFATNDHGVALSNK
ILLRVSKAPLWPKEVLEPVVVTEGTPLVLACNPPPGLPPPFTFWMNSAMIPIPQDKRVSM
GLNGDLYFSNVLIKDAHTDYCCNARFLFTHTIQQKNPFTLKVLTSRKVAESTPIFLSPSG
TESSKMVLRDEQLLLECIAAGLPTPTIKWFKKGGDLPAKKVKFDNYNKTLKIINVSEEDA
GEYVCMANTHLGIIRHSIFVQVKAAPYWLDKPTNLVLAPEENGRLVCRANGNPKPIIEWM
INGQPIENTPLIPIRPQVLGDTIIFRSVQMGSSAVYQCNASNQHGYLLANAFVSVLDMLP
RMLGPKNQLIKVIVNNRTFLDCPFFGSPLPDLRWFKNGQGSGLDGGHYRVYINGTLEIKR
TRAEDEGTYTCVANSMLGKAENQVRLEVKEPTRIVQVPEHQSAVRGSLVHFDCKVKSDPS
LPITVAWTKDDKPLSLGWRLRKDGESLLIPNVNEGDEGTYTCTVTSEIDQDSASARLTVL
EEASLNPSSALPPDRPDPPVELDLSDPTARSVRLTWIPENDHRSPVTEFLVQFEENRWEP
GRWQNLSTYPGELNSVILQLAPYANYQFRVIAINAVGQSQPSRPSPRYLSNGAAPDAIPR
GLRGWGTKKDNMEITWEPLLNLERNGPNLHYSVWWRRKDLGEGWSNVTTVESKHVIHNTE
TYMPYEIKVQARNEFGKGPESNVAVGYSGEDKPTDAPADLRVSKVDSTKANLHWTPVDMS
SVQGEFKEYRLYYWRESSLVLGLVVSKEKKTKGFYSIVAEPSGILSDLVPFSKYKMFLVV
ANNVFEGPPSNTVDITTKEGVPDVPQFFSINRRTFDTVHLEWDKPLEPNGILIGYQLKYQ
TVNGSRVGRPQLETFTPNVTVFNVHMPNRSTRYNFYLSALTQVGSGKVYALESPQFANEA
YIDQVDIATQGWFIGLMCAIALIILILLIVCFIKRSRGGKYPVRDKKDLPLDPVDQKDQD
GSFDYPGLESSDEDNKPLQGSQTSLDGNVKESDDSLVDYGEGGDGQFNEDGSFIGQYTVK
KDKDETEGNESSEATSPVNAIYSLA
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgtgctattactgttgcacgaagcagcagccattgaagtaccacaagaccca
aagatcctgcaagagctgaagcagcctcccaccatcgtcaaacagtcagtgaaggactac
attgtcgaccccagagataacatcatcatcgagtgtgaggccaagggcaacccagtgcca
acgttctcatggcgaaggaacgggaagtttttcaacatcgggaaagatcccagggtgacg
atgcgaaaacgctcgggaactctggagatcggtttccgtagcggaggacgaccagaggac
tatgagggggagtaccagtgctttgccacaaatgaccacggagtggctctgtccaacaaa
atcctgctcagggtctccaaggctccattgtggcctaaagaggtgctggagccggtcgtg
gtgactgaaggcacaccgctggtgctagcctgcaaccccccaccaggcctgcctcctccg
ttcaccttctggatgaacagtgcgatgattccgatccctcaggataagagggtgtccatg
ggcctgaatggagacctgtacttctccaacgtcttgatcaaagacgctcacaccgactac
tgctgcaacgctcgcttcctcttcacacacaccatccaacagaagaaccccttcacactc
aaagtcctgacgagccgcaaagtagccgagtccacgccgatcttcctctccccctcgggg
accgagagctccaagatggtgctacgggacgagcaactgctgctggagtgtattgctgct
ggacttccgacacccaccatcaagtggtttaagaagggtggggacctgccagccaagaag
gtgaagtttgacaactacaacaagaccctgaagatcatcaacgtgtcagaggaggatgct
ggggagtacgtttgcatggccaacacccatttaggcatcatacgccactccatctttgtc
caggtcaaagcggctccttattggctcgacaaacccaccaacctggtgctcgctccggag
gagaacggccggctggtgtgtcgggccaacggcaaccccaaacccatcatcgagtggatg
atcaacggacagcctatagagaacactcccctcatccccatcagaccccaggttcttggt
gacaccatcatcttccgctcggtgcagatgggaagcagtgctgtctaccagtgcaacgcc
tccaaccagcacggctacctgctggccaacgccttcgtcagcgtcctcgacatgctcccg
aggatgctaggccctaaaaaccagctgatcaaagtcattgtgaacaaccgcaccttccta
gactgtcctttcttcggatctcctctgccggacctccgctggtttaagaacggacagggc
agtgggctggacggaggtcactaccgcgtttacatcaacggcaccctggagatcaaacgg
acccgagcagaggacgaaggcacctacacctgtgtggccaacagcatgctgggcaaggca
gagaaccaggtccgcctagaggtcaaagagccgactcgtattgttcaagtcccggagcac
cagtcggccgtcaggggctccctggttcacttcgactgtaaggtgaagtctgaccccagc
ctgcccatcactgtggcctggaccaaggatgacaagcctctctccctgggctggaggctg
aggaaagacggggagtcgctgctcatccctaatgtgaacgagggggacgagggaacctac
acctgcactgtcacatctgagatagaccaggactccgcctcagcccgcctcacggtgtta
gaggaagcctccctcaacccctctagtgccttgcctccagaccgtccagatcctcccgtg
gaactggatctgtctgaccccacagcccgcagcgttcgtctcacctggatccccgaaaac
gaccaccggagcccagtcacagaattcctggtccagtttgaggagaaccgttgggagccg
ggcaggtggcagaacctatccacataccccggagaactcaactctgtcatcctgcagctc
gccccctacgccaactaccagttcagggtcatcgccatcaacgcagtgggccagagtcag
cccagccggccctcgccacggtacctgtccaacggagctgctccagatgccatccccaga
ggtctacgaggatggggaaccaagaaggacaatatggagatcacctgggagcctctgctt
aatctggagaggaacgggccaaacctgcactacagcgtgtggtggagacggaaggatttg
ggagaagggtggagtaacgtgaccacggtggagtccaaacatgtcatccacaacacagag
acctacatgccttatgagatcaaagtccaggccaggaatgagtttggaaagggacctgag
tctaatgtggccgttggatactccggagaggacaagcccaccgacgctcctgctgacctg
cgggtgtcaaaggttgacagcaccaaggccaacttgcactggacgcccgtggacatgagc
tctgtgcagggagagttcaaggagtacaggctatactactggcgggagtccagtctggtt
ctgggtctggtggtcagtaaggagaagaagaccaaaggtttctacagcatcgtggctgag
ccgtccggcatcctcagcgacctggtgcccttctccaaatacaagatgttcctggttgtg
gccaacaacgtctttgagggtccacccagcaacacggtggacatcaccaccaaggaagga
gtgccagatgtaccacagtttttcagcattaaccggagaacttttgacaccgtccacctt
gaatgggacaaacctctggagcccaacggcattctgattggataccagctcaagtaccaa
acagttaatggctccagagtgggccgtccccagttggagactttcactcctaatgtgaca
gtgtttaacgtccacatgccgaaccgatccacccgctacaatttctacctgtcagctctc
acccaggtgggatcagggaaggtctatgctttggagtcccctcaatttgccaatgaagcc
tacatagaccaggtagacatagccactcaaggctggttcattggcctgatgtgtgccatc
gccctcatcatactgatcctcctcatcgtctgcttcatcaagaggagccgcgggggcaaa
tacccagtccgtgacaaaaaagatctccccttggacccagtagatcagaaagatcaggac
ggatccttcgattaccctggtcttgaaagcagcgacgaggacaacaagcccctccagggc
agccagacgtcgctggacggcaatgtgaaggaaagcgacgacagtctggtggactacggc
gaaggtggtgatggccaattcaacgaggatggctctttcatcggccagtacacggtgaag
aaggacaaggatgaaacggagggcaacgagagctctgaggccacctcgcccgtcaacgcc
atctactcgctggcgtaa
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integrated database retrieval system
