Pseudoliparis swirei (Mariana hadal snailfish): 130208538
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Entry
130208538 CDS
T09868
Symbol
top1a
Name
(RefSeq) DNA topoisomerase I, like isoform X1
KO
K03163
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pswi03032
]
130208538 (top1a)
Enzymes [BR:
pswi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
130208538 (top1a)
DNA replication proteins [BR:
pswi03032
]
Eukaryotic type
DNA Topoisomerases
130208538 (top1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Topoisom_I_N
Topo_C_assoc
Motif
Other DBs
NCBI-GeneID:
130208538
NCBI-ProteinID:
XP_056293697
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Position
18:complement(25620479..25634640)
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AA seq
744 aa
AA seq
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MSGDQIDCGSRFNDSHKHKEKYKEKEHKHKDHKKDKEREKAKHGNSDHNDSSDQKYRDKE
KEKMKNKDGSADKYKDKHKEKKTKPLDVKVKKENGFASPPPAVKSEPQDTFFHSPKLEKS
LKRERADDNDSDFKAKKVKIENDKKVKKRKPEEEDIKPKKPTNKRAVTDGRKKVKKEPEE
KWKWWEEERYTDGSKWKFLEHKGPVFAPPYEPLPSHVKFSYDGKHMKLRPEAEEVATFYA
KMLDHEYTTKDIFRKNFFKDWRKEMSAEEKAKLTDLKKCDFAPMSEYFKAQSEARKAMSK
DAKLKIKEENERLLQLYGFCIMDNHRERIANFRIEPPGLFRGRGDHPKMGMLKRRSRPKD
IIVNCSKDSKHPEPPPGTKWKEVRHDNKVTWLVSWTENIQGSIKYIMLNPSSRIKGEKDW
QKYETARQLKKCVDRIRTQYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKEEGETADT
VGCCSLRVEHIKLYPENDGQEFVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKETD
DDLFDRLNTSVLNKHLQELMDGLTAKVFRTYNASITLQQQLKQLTSAEENLLAKILSYNR
ANRAVAILCNHQRAPPKTFEKSMQNLQAKIDAKRDQLYDAKRELKSSKADAKVRRDEKSK
KTVETRKKAVERTEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKWSIPVE
KIYNKTQREKFAWAIDMAEGDFEF
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgagtggggaccagattgactgcggctctcgtttcaacgactctcacaagcacaaagaa
aagtacaaagagaaggaacacaaacataaggaccacaaaaaggataaggaacgggaaaaa
gcaaagcatggcaacagtgatcacaatgactcctctgaccaaaaatacagagacaaggag
aaggaaaagatgaagaacaaagatggcagcgcagacaaatacaaggacaagcacaaggag
aagaagacgaagccccttgatgtaaaagtcaaaaaggagaatggctttgccagccctcct
ccagcagtgaagtccgagcctcaggatacctttttccactctcctaaacttgagaagtct
ctaaaaagagaacgggccgacgataacgactctgactttaaggccaaaaaagtaaagatt
gaaaatgacaagaaggtcaagaaaaggaaaccagaggaggaggatattaagcccaaaaag
ccaacaaataaaagagcagtcactgacggaagaaagaaagtaaagaaggagccagaggag
aagtggaaatggtgggaggaagagagatacacagatggctccaaatggaaatttctggaa
cacaaaggacctgttttcgcaccaccgtacgagcctcttcctagtcacgtcaaattttcc
tatgacggtaagcacatgaagctgcgcccagaggcggaagaggtggccacgttctatgcc
aaaatgctggaccacgagtacaccacaaaggatatcttccgcaaaaacttctttaaagat
tggaggaaggaaatgtctgcagaggagaaggccaagttgaccgatctgaagaagtgtgac
ttcgctccgatgagtgaatacttcaaggcgcagtctgaagccaggaaggccatgtccaag
gatgccaaactgaaaatcaaggaggagaacgagcggctcttacagctgtacggcttctgc
atcatggacaaccaccgggaacgtatcgctaactttcgcatcgagcctccgggcctgttc
cgcggccggggggaccatcccaaaatgggcatgctcaaacgtcgcagcaggcctaaagat
atcatcgtcaactgcagcaaggattcaaagcacccagagcctcctccaggcaccaagtgg
aaagaggttcgtcatgacaacaaggtcacttggctggtgtcgtggacggagaacattcaa
ggctcgatcaagtacatcatgctgaaccccagctcaaggatcaagggagagaaggactgg
cagaagtatgaaactgctcgtcagctgaagaaatgtgtggaccgcatccgaacccagtac
cgcgaggactggaagtccaaggagatgaggatcaggcaaagggctgtggcgctctacttt
atcgacaagctggctctgagagcgggtaacgagaaggaggaaggggagactgcggacacg
gtgggctgctgctcgctgagagtcgaacacatcaaactctatccagagaacgacgggcaa
gagtttgtggtggagtttgacttccttggcaaggactccattcgctactacaacaaagtc
cctgtggagaaacgggtttttaagaatctacagttgtttatggagaacaaggagactgac
gacgacctgtttgatcgcctgaatacttctgttctgaacaagcaccttcaggagctgatg
gacggactgacggccaaagtcttccgtacctacaacgcctccatcaccctgcagcagcag
ctgaagcagctcacaagtgcggaagagaaccttctagccaagatcctgtcctacaaccgg
gccaaccgggctgtggccatcctgtgtaaccatcagcgggctcccccaaagacatttgag
aagtctatgcagaacctgcaggcgaagattgatgctaaaagggaccagctctatgatgcc
aagagggaactgaagagctccaaggctgatgccaaagtacggagagatgaaaaatccaaa
aagaccgtggagaccaggaagaaggcggtcgagaggaccgaggagcagctgatgaagctg
gaggtgcaggcgaccgatcgagaggagaacaagcagatcgctctcggcacgtccaagctc
aactatctggaccctcgcatctctgtggcttggtgtaagaagtggagcattcccgtggag
aagatctacaacaagacccagcgcgagaagtttgcctgggccatcgacatggccgagggc
gactttgaattttaa
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