Pseudoliparis swirei (Mariana hadal snailfish): 130208657
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Entry
130208657 CDS
T09868
Name
(RefSeq) RNA-binding protein 39-like
KO
K13091
RNA-binding protein 23/39
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pswi03041
]
130208657
Spliceosome [BR:
pswi03041
]
Common components
Common spliceosomal components
General mRNP proteins
130208657
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RBD_DEAH11
RRM_7
RRM_5
PRD1_P5_spike_N
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
130208657
NCBI-ProteinID:
XP_056293887
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All DBs
Position
18:1952558..1959360
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AA seq
502 aa
AA seq
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MADDLDIEAMLEAPFRKEDLKSQSPEATAPEPEERTKSGSDRKKRSRDRKRSRDKKRSRS
RERKSSRSRDTKRRSRSRERRSSRERGGRYRDHHQNRKRSKSKSPPVRKEKSPLRQPVDN
LSPEERDARTVFCMQLAARIRPRDLEDFFSSVGKVRDVRMISDRNSRKSKGIAYIEFVET
NSVPLAIGLTGQRLLAVPIIVQASQAEKNRAAAAAAAANNLQKGSSGPMRLYVGSLHFNI
TEEMLRGIFEPFGRIESIQLMMDGDTGTSKGYGFITFADAECAKKALEQLNGFELAGRPM
KVGNVTERSDAFSSFLDSDELERSGIDLGTTGRLQLMARLAEGTGLQMPPAAQQALQMSG
MLAFGAMAAVSAAMNPTLNMNSSMTNLPSQPLATHCFQLSNMFNPKFEDVPGWEMDIQHD
VIEECNKHGGVVHIYIDKNSAEGNVYVKCPSIPSAMAAVNALHGRYFAGKMITASYVPLP
TYHNLFPESAVTTQPLAPPPRR
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgacctcgacatcgaggcgatgctggaggctccgttcagaaaggaggaccta
aagagccaaagccccgaggcaacggcaccagaaccggaggaacgcaccaagagcgggtcc
gacaggaagaagcgcagccgcgaccggaagcgcagccgcgacaagaagcgcagccgcagc
cgagagcgcaagagcagccgcagccgagacaccaagaggaggagccgcagccgagagcgc
cgcagcagccgagagaggggggggcgctaccgagaccaccaccagaaccgtaaacggtcc
aagagtaagagcccccccgtcaggaaggagaagagtccactcaggcagcccgtagataac
ctgagtccagaggagcgcgacgcccgcacggtgttctgcatgcagctcgccgcccggata
cgaccccgagacctggaggacttcttctcctctgttgggaaggtgcgtgacgtgaggatg
atttccgaccggaactcccgcaagtcgaagggcatcgcctacatcgagttcgtggagacc
aactcggttcctctggccatcgggctgacggggcaaaggctgctggcagttcccatcatc
gtgcaggcctcgcaggcggagaagaaccgagcagccgccgcggccgcagccgccaacaac
ctgcagaagggctcatcgggaccgatgaggctctacgtcgggtcactgcacttcaacatc
accgaggagatgctgaggggcatctttgagccctttggacggattgagagcatccagctg
atgatggacggagacacaggaacctctaaaggctacggcttcatcacgtttgccgacgcc
gagtgcgccaagaaggctctggagcagctgaacggcttcgagctggccggccggcccatg
aaggtcggcaacgtgacggagcgctccgacgccttctcctcgttcctcgacagcgacgag
ctggagcgcagcggcatcgacctcggcaccaccgggcggctgcagctgatggcgcggctc
gccgagggtactgggctccagatgcctcccgccgcccagcaggctctgcagatgagcggc
atgctcgccttcggcgcgatggccgccgtgtcagctgctatgaatccaactctcaacatg
aactccagcatgactaatcttccctctcagccgctcgccacacactgcttccaactgtcc
aacatgttcaaccccaagtttgaggacgttcccggttgggagatggacatccagcatgac
gtcatcgaggagtgtaacaaacacggaggcgtcgtccacatctacatcgacaagaactct
gctgaggggaacgtttacgtcaagtgtccgtcaatcccctccgccatggccgcggtcaac
gctctccatggacgctactttgctggtaagatgatcacggcttcctacgtcccgttgccc
acctaccacaacctgttcccggagtccgccgtcaccacgcagccgctggccccgcccccc
cgaagatga
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