Pseudoliparis swirei (Mariana hadal snailfish): 130208687
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Entry
130208687 CDS
T09868
Symbol
prdm2b
Name
(RefSeq) PR domain zinc finger protein 2
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi00310
Lysine degradation
pswi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
130208687 (prdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130208687 (prdm2b)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130208687 (prdm2b)
Enzymes [BR:
pswi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
130208687 (prdm2b)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
130208687 (prdm2b)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
130208687 (prdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_4
zf-C2H2
zf-C2H2_6
zf-C2HE
zf-C2HC_2
zf-C2H2_jaz
zf-H2C2_2
zf-C2H2_8
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-GeneID:
130208687
NCBI-ProteinID:
XP_056293920
LinkDB
All DBs
Position
18:complement(12802924..12811919)
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AA seq
1514 aa
AA seq
DB search
MWDGEEGLKEEDERPSTLGPSQEPQETHPMRNTDCRDVEDMSTVMTRRGNGEEEEEDADD
LEEQTAQCSPAADSIQNKQPGSLLTRGEESHKDPQGTVESSSLAGQEPQVDPDPDLDPDP
DDDLEGDPHGESHPCQHCERHFSTRQGLERHIHIHAITNQQTQLFKCRYCSKSFGSQVGR
RRHERRHESGLKKRPGSLAGTASLLSPVMQTGGSSPDCTSPTSHYIAIGSQVTGGPLHNS
EMQKKELEPYADRPFILDENGESKELHPCKYCNKAFGTHTNMRRHQRRIHERHLLPKGVR
RKGMMLQAASVQKQQQPDESPSISPPPVYVPSADTEDEADGDDYAIDISKNISENLSFYI
DGKIVSTSSVSSCEVIEVDSRSAALFGLDTVIISPHQISQALKVEGRTSVVKQFSNIGQP
ATKRRTSTPPFVPSLKVEMESASLAASSLSSSSSTSSSSNLLVGGLFQQAADSSAFQREK
SVYLSPKLKQLLQTQDIQKSTLTLITESHRLASPLSVTQLPGASGRFKRRTSSPPSSPQL
SPACKTESCKPEVVSSFALKVPKLESFSASPPGSLLDKEDGDGLNLSDDNMHGQTSSNSG
GNSCNQQPLDLSNSVTRRRDSSNKVLGDSALDLSFQRKSNVEPELKGGPAPQPLIKKRKP
NTSMLEKVLMNDYLGLPLPGDEGPMAGANLSCFHSRSPSIATESAHPSPPSLTPVTMNPS
SPGNSSGTSPTPPPPLLPTIPSSPALPSSPLSQPSDSCVQRSLPVLSPKMSPRSVEHHPP
SGSEDNLFAEEDKEEEGNHSSEPRDFPNTPLKDPVHRSASLSPPEPTSMDLAAVEGDISL
TASSAAVANGQMNQNRDSLTEESLAALSPQPESSSSSSSSPPPASQDPSPTLVLQSVPQI
KIKEEPESCIDELPVLNRAPPGAVASSPQPAAPDKPSDKTSVAEEGDSTYSKTFVCNVCE
EPFDSIKELSGHITEHAADRPFKCEFCVQLFGDAPALLAHRTALHGVGKIFVCSVCSKEF
AFLCNLQQHQKDLHPNETCSHATVESGKLRPQNYTDPSRAKEESSPSTPAPETADGSAPH
SDAEKEEPDVNGNHTEDPNEELYTTIKIMASEGGKPKGPDVRLGINQHYPSYKPPPFPYH
SRSHAGSVASATNFTTHNIPQTFSTAIRCTKCGNSFDNMPELHKHILACASASDKKRYTP
KKNPIPLKQIVKSPNGVVSTSAAIAGQSPFRRMGQPKRLNFNQDTNGKTKMSALSKKKNQ
LVQKAITQKNKAATSAKKATVKVEEELASNVCPHCSREFTYPASLSKHMAVSCPMKPVVK
KGKKSLAEVKKEALSAVDKHIKLRKKASDFEIPQTEREPKPLGKTRARSSGAADPEPAPA
HKGKPAAPLGRLKRPASFPAPVSASKKAKKGHVQSLPPSPSDPDAPSVTAHQRPAVRMQR
VGKEAAPKRSAEAKSPPPAQQLKREERFSLRMRERVGGPVTRSLQMVNAAPSVEVKTEEP
PTQEPKETQEVLMK
NT seq
4545 nt
NT seq
+upstream
nt +downstream
nt
atgtgggatggagaagaaggtctgaaggaggaggacgagaggccatccaccttagggccc
tcacaggaaccccaggaaacccaccccatgagaaacactgactgtagggacgtggaggac
atgtcaacagtgatgactcgcaggggaaatggggaggaagaagaggaggatgctgatgat
ttggaggaacaaaccgctcagtgttcacctgcggcagattccatacaaaataaacaaccg
ggctctttgctgacccgcggggaagaaagccataaggatccacagggaacggttgagtct
tcctcgcttgcagggcaagaaccacaggttgatcctgatcctgatcttgaccccgacccc
gatgatgatcttgagggcgacccccatggagagtcacatccctgtcagcactgtgagcgc
cacttctccaccagacagggtctggaacgtcacatacacattcacgccatcactaaccag
caaacgcaactgttcaagtgccggtactgcagtaaatcctttggctcacaggtgggccgg
cggcggcatgagagacggcacgagagtgggcttaaaaaaaggcctggctctctggcaggc
actgccagtctactcagtcctgtgatgcagactggtgggtcaagtcccgactgcaccagc
ccgaccagtcactatatagccatagggtcccaggttactggaggacctctgcacaactct
gagatgcagaaaaaggagttggagccttatgctgaccgcccttttatattggatgaaaat
ggggagtcaaaggaactccatccctgcaaatactgtaataaagcgtttggcacacacaca
aacatgcgtcgacatcaacggagaatacatgaacggcacttattaccaaagggtgttcgc
aggaaaggcatgatgctgcaagcggcgtcagtgcagaagcagcagcagcctgatgagtca
ccgagcatcagccctccgcccgtctacgtgcccagtgccgacacagaagacgaggcagac
ggggacgattacgcaatcgacatttctaaaaacatctctgagaatttgagcttctacatt
gacggcaagattgtgtccactagttcagtgagcagctgtgaggtgatcgaggtggactcc
agatctgcggctctgttcggtctggacacggtcatcatcagtccacatcagatcagtcag
gcgctgaaggtcgagggtcgaaccagcgttgtgaagcaattctccaacattggccagccg
gcaacaaaaagaagaacatccacacccccatttgttcccagccttaaagtcgagatggag
tcggcatctctcgcagcctcttcattgtcttcatcctcttctacatcttcctcatctaac
ctgttagtgggtggactgtttcaacaagctgccgattcatccgcatttcaacgggagaaa
agcgtttatctctcaccgaaactcaaacagctccttcagacacaagacattcagaaatca
accctcaccctgataacagaaagccatagactggcctcaccgctgtcggtcacccagctg
ccaggggcttccggccgatttaaaagaagaacatcctctcccccgtcatctccacaactc
agcccggcgtgtaaaacggagagctgtaaacccgaggtggtgagctcattcgccttaaag
gtgccaaagctcgagagcttcagtgcatcacctcctgggagcttactggacaaggaagat
ggagacggcctcaacctttctgatgataatatgcacggccaaacctcgtctaacagcggt
ggaaactcctgcaatcagcagcccttggatctgtcgaactccgtcaccaggaggagggac
agctccaacaaggtgctcggggattcggctcttgatttaagtttccaacggaagagcaac
gtcgagcctgaactgaagggaggtccggcgccacagccactgataaaaaagagaaagccg
aacactagcatgcttgaaaaggtgctgatgaatgattatttaggtctgccgttgccagga
gatgagggccccatggccggagcaaatttgagttgtttccactcgcgctcaccgagcatc
gcgacagaatctgcccacccctctccaccctctttgacccccgtcaccatgaacccctct
tcccccggcaactccagcgggacctccccgacaccaccaccccctctactccccaccata
ccatcttcgccggctctgccgagctctcctctttctcagccttcagactcctgtgtccag
aggtctcttcctgtcctctcgccaaaaatgtctccaagatcagttgaacaccatcccccg
tcgggctccgaggacaatttgtttgccgaggaagacaaagaggaggaagggaaccatagc
tctgagccacgggacttccccaacactccacttaaagatcccgttcatcgctcggcgtcg
ttaagccctcctgagccgacatcgatggatctggccgccgtggaaggagatatatccctg
actgcatcttccgccgcagtggcaaatggtcaaatgaaccaaaaccgtgactcgttaaca
gaagaatctcttgctgccctctcaccccagccagaatcttcatcttcctcatcatcatct
cctcctcctgcatcgcaggatccatccccaacactggttttacaatccgtccctcagatt
aagataaaagaagagcccgagtcctgcatagatgagctgccggttctgaatcgtgcccct
ccgggcgcggttgcctcttcgccgcagccggccgctcccgataaaccgtctgataaaacc
tctgtggcggaggaaggcgactcgacgtacagcaagacctttgtgtgcaacgtgtgcgag
gagccgttcgactccatcaaagagctcagcggacacatcaccgagcacgctgccgatcgg
cccttcaagtgtgaattctgcgtgcagctgtttggcgacgctccggccctcctggctcac
cggacagcactacacggcgtgggcaagatctttgtgtgctccgtctgttccaaggagttt
gcatttctctgtaacctccagcagcaccaaaaggatttgcatccaaatgagacgtgttcg
cacgccactgtggaaagtggcaagcttaggccacaaaactacacggatccatccagagcc
aaagaggaaagcagtccttcaacaccagcaccggagacggctgatggatctgctccgcac
agtgacgccgaaaaagaagagcccgatgttaacgggaatcatacggaggaccccaacgag
gagctgtacactacaataaagatcatggcctcagaaggagggaagcctaaaggcccggat
gttcgccttggcattaaccaacactaccccagttataagccacccccgtttccttatcat
agccgttcccacgccggatcggtggcttcagctacgaacttcaccacccacaacatccca
caaacttttagcactgccatacgctgcacaaaatgtggcaacagcttcgacaacatgcct
gagttgcacaagcacattttggcctgtgccagtgccagtgataagaagcgctacactccc
aagaaaaaccccatccccctcaagcaaatagtgaagagtccgaacggagtcgtgtcaacc
tcggcagccattgcaggccagagcccgtttcgtaggatgggtcagccaaagagactcaac
tttaatcaagatacaaacgggaaaactaaaatgagtgcgctcagtaagaagaaaaaccag
ctcgtccagaaggcgatcacacagaaaaataaagctgccacttctgcaaagaaggctact
gtgaaagttgaagaagagctggcctctaacgtttgcccccactgcagtcgggagtttact
tatcccgcaagtctcagtaaacacatggcagtcagctgtcccatgaagcctgttgttaaa
aagggcaaaaaaagtctcgcagaggtgaaaaaagaggcgttgtcagcggtagataaacac
atcaagcttagaaagaaagcctcagactttgaaataccgcagacggagcgggagcctaaa
cccctcggaaagaccagagctcgcagctccggagcagccgaccccgaacccgccccggca
cacaaagggaaacccgccgctccgctgggccgactaaagaggcccgcctcgttcccagca
ccggtttctgcaagcaagaaagcgaagaagggccacgttcagtctctacctccatccccg
tcggaccccgacgctcccagtgtgaccgcacaccaacggccagccgtgagaatgcagcgt
gtgggcaaagaggcagcgcccaagagatcagccgaggccaaatcaccgccgccggcgcaa
cagctgaagagagaggagcgcttctcacttcgaatgagggagagagtcggtggtccagtc
accaggagcttacaaatggtcaacgccgctccttctgttgaagtgaaaacggaggagcca
ccaactcaagagccaaaagagactcaggaagtgctgatgaagtga
DBGET
integrated database retrieval system
