Pseudoliparis swirei (Mariana hadal snailfish): 130208738
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Entry
130208738 CDS
T09868
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130208738 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130208738 (smarcc2)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130208738 (smarcc2)
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130208738 (smarcc2)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130208738 (smarcc2)
PBAF complex
130208738 (smarcc2)
GBAF(ncBAF) complex
130208738 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
PaaA2
Motif
Other DBs
NCBI-GeneID:
130208738
NCBI-ProteinID:
XP_056294000
LinkDB
All DBs
Position
18:complement(16822884..16835351)
Genome browser
AA seq
1039 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKCFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSDIEPKLLGKLKDIIKRHQGSVSEDKASSSHVVVP
IPTSLEEEEWVRPVMKRDKQVLLHWGYLPDSYDTWIQANEIEAAVEDPPSPEKPRKVHAK
WILDLDQYNEWMNEEDYEVGEGYPKRKRISAKTLTDEVSTPDERRDKKSGSAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQKEEEQEDPSKDLDEASPVPASEEGNPPKTN
NTKKDSDSTPVKGGTDMDEQEDESMETTGKEEEEGSPSVKGEPVKGSDLHEDNVTEQTHH
IIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTS
TACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLVP
LQPKTSQTPATQQVISFPDKVKEKPADLQNFGLRTDMYSKKTCSAKSKSTASSMREWSEQ
ETLLLLEGLEMYKDDWNKVSEHVASRTQDECILHFLRLPIEDPYLEANSSSLGPLAFQPV
PFSQAGNPVMSTVAFLASVVDPRIASAAAKSALEEFSRMKEEVPGTLVEAHVRRVEEAAR
VSGRQDPLYGLEGSGIAGTGLEEGDRPDESSVERKSDSQPGDEKREAKDSKDGATEEEEK
RAENGKKEEERGREAEGERETNKRESEIGDGEKAKDGKEGTEEGQREAESEGERKAKVER
DVAEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELET
IMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQQQSQASGPPAPAPP
PPAPNTPVPPLAPSPASPASTSAPAPESQPPHTSPPCPPGATPATHSSSSSSTTPVLHEP
TPPLPGETLHPSAPVQPPQ
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcgtaagaaagacggcggcccgaatgtaaaatatttcgaagcgtctgatacc
gtttctcagtttgataatgtccgcgtctggctgggaaagaattacaaaaagtacatccag
gccgagccccccaccaacaagtctctgtccagcctggtggtccagctgctccagttccag
gaggaggtgttcggtcgacatgtcagcaaccctccgctgaccaagctgccaatgaaatgt
tttctggacttcaagtcaggtggggctctctgccacatcctggctgctgcctacaagttc
aagagtgaccagggatggcgcaggtttgacttccagaatccatcgaggatggaccgaaat
gtggagatgttcatgaccattgagaagtctttagtgcaaaacaactgcctgagtcggcca
gtcatctacctgagctctgacatagagccaaaactgctcgggaaactaaaagacatcata
aaaagacatcagggctcagtaagtgaagacaaggcctccagctcccatgttgttgttcct
attcccaccagcctggaggaagaggagtgggtgcgtccagtgatgaagagagataagcaa
gtgctgctccactggggatatttgcctgacagttacgacacatggatccaagctaatgag
atcgaggctgctgtggaggatcctcccagcccagaaaaacctaggaaggtccatgccaag
tggattttagacctggaccagtataacgagtggatgaatgaggaggactatgaagtgggc
gagggctaccctaagaggaagaggatctcagccaagaccctgacagatgaagtgagcact
cccgatgagcggagggacaagaagtctggcagtgcgaagaagaggaagaggtcgccgtcg
ccatcccccacccctccgcctcaggagagcaagaagaagaataccaaaaaagggccaacg
accccgtacaccaagtctaaacgaggccaaaaggaagaggaacaggaggatccgagtaaa
gacttggatgaagcatcacctgttccagcatcagaagagggaaacccacctaaaacaaat
aacaccaagaaggactctgattcaactcccgtcaagggaggaacagatatggacgagcaa
gaggatgagtccatggaaacaacaggcaaggaggaggaggagggctctccaagcgtgaag
ggggaaccagtgaaaggatcggacctccacgaagacaacgtgaccgagcaaactcatcac
attattataccgagctacgcggcctggtttgactacaacagtgttcatgccattgagcgc
agagccttgccagaatttttcaatgggaagaacaaatccaaaaccccggagatttacctg
gcgtacaggaactttatgattgacacctaccggctgaaccctcaggaatatctgacgtcc
acggcctgtcgcagaaacctggcaggagacgtgtgtgccatcatgagagtgcacgccttc
ctggagcagtggggcctgatcaattaccaggttgactctgagagccgacccacgcccatg
ggccccccacccacttctcacttccacgtcctggcagacactccgtccagtctggtgccc
ctgcagcccaagacgtcccagacccctgcgacccagcaggtgatctcattcccagataaa
gtgaaggagaaaccagccgatctacaaaactttgggttgcggactgacatgtacagcaag
aagacttgttctgcaaagagcaagagcacagcgagttccatgagggagtggtcagagcaa
gaaacactactcctacttgaggggttggagatgtacaaggacgactggaacaaggtttca
gagcacgtggccagccgtacgcaggatgagtgcatcctgcacttcctgcggctgcccatt
gaggacccttacttagaggcgaactcgtcgtccctgggaccgctagccttccagccagtt
cctttcagccaggcaggaaaccctgtcatgagcacagtggccttcctcgcctctgtcgtc
gacccacgcattgcctccgctgcagccaaatctgctctggaggagttttctcgtatgaag
gaggaggttcctggcactcttgttgaggctcacgtgaggcgggtcgaggaggcggcgagg
gtcagcggccgacaggacccgctgtatggcttggagggtagtggcatcgcaggcaccggc
ctggaggagggagacaggcccgatgaaagtagtgttgaaagaaagagtgacagccaaccg
ggcgacgagaagagggaagccaaggacagcaaagatggagcgactgaggaagaggagaaa
cgggcagagaatgggaagaaggaagaagaaagaggaagagaagcagaaggagagagggag
acgaacaaaagagagtcagagatcggtgacggagagaaggcgaaggacggaaaagagggc
acagaggaaggacagagagaagcagagagtgaaggagagaggaaggctaaggtggagcgt
gacgttgcagaggggaaccttgccactgctgctgcgtctgctctcgctgctgctgccgtc
aaagccaagcacctggctgcggttgaagagaggaagattaaatccctcgtggctctgctg
gtggagacccaaatgaagaagctggagattaaactgcgacattttgaagaactggaaacc
ataatggacagagagagggaggctttggagtaccagcgtcagcagctgctggccgaccgt
cagtccttccacatggaacagttgaaatatgccgagatgagggcccgccagcagcacttc
cagcagattcagcaccagcagcaaagccaggccagtggccccccagcaccagccccacca
cccccggcccccaacacaccagtgccgccgctggcccccagtcccgcgtccccagcctca
acttctgcaccggccccggagtcccaaccccctcacacctcgcccccctgccccccaggt
gcaaccccagctacccactcaagctccagctccagcactacgcctgtactccacgagccc
actccccctcttcctggagaaacactccatccttcagctccagtccaacctccacagtga
DBGET
integrated database retrieval system
