Pseudoliparis swirei (Mariana hadal snailfish): 130208800
Help
Entry
130208800 CDS
T09868
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130208800 (pdzrn3b)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130208800 (pdzrn3b)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
130208800 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Prok-RING_4
PDZ_Tricorn
Sina_ZnF
zf-rbx1
zf-TRAF
zf-RING_6
TRAF3_RING
U-box
IBR_1
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
130208800
NCBI-ProteinID:
XP_056294103
LinkDB
All DBs
Position
18:24278490..24369639
Genome browser
AA seq
1009 aa
AA seq
DB search
MGFELDRFKGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRVS
AKELNHVLPLKNLILKLEIKCDNHARGCDAVVRLQHLAEHTEMCDYAPAMCRNRGCGEVL
DPRDVDVHMRETCDCRPVGTCESGCGLTLTHREQKSDGHCCLRALKAHNGALHCKVISLD
REFKKQMIQANKREKSLLAQLSAVHGELQMTALKYQKKFTEYSERIDSLTKTVAFSCKEG
ETQSATVVLLREGGSLGFNIVGGRPCADDSDSPSNEGIFVSKVIEEGPADKDEGLQIHDR
IIEVNGKDLSKATHDQAVEAFRTAKEPIVVQVLRRAPHPKAVGGPAGDARVSDISTQTDI
TLQHIMALTKLAPASPPMTELEEYLLPEEHPPHAYFDPNDFLEVMQQDIEREELEYEEVD
LYRAHIQDKLGLTICYRTDDEDEAGIYISEIDPNSIAARDGRIREGDKIIQINGIEIQNR
EDAVSLLTSEGNQNVSLLVARPEIQMDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLQQKKREEDSGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENLGDDHTTASNTLG
SCRKLAYSQDTLGSGDLPYADADFLGIPADECERFRELLELKCQMRNSGAQGLSDQGGPD
QEGADKELEMLNEELRTIELECLNIVRAHKMQQLREQCREAWSLHDDGAGGGGRELSDIT
ELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLQRGAESRGAAGSDGRLPEPPPTPGR
DAGGPGRSGRGPAKDSEGPPPSPSPPPAEDKERKPHSPYKHAHIPAHAQHYQSYMQLIQQ
RSAVEYAQSQMSLASMCRDGGLEPKMEWKVKIRSDGTRYITKRPVRDKLLRERALRIHAE
RSGVTTDDDAVSELKMGRYWSKEERKQHAVRSKEQRQRREFMKQSRADCLKEDDRREPNI
IELSHKKMMKRRSKKIFDNWMTIQELLTHGAKSPDGSRVYNSLLSVTTV
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgaactggaccgcttcaagggcaccgtggacccggacttcaaatgcaacttg
tgcaataaagtcctggaggacccgctgacgactccgtgcggccacgtcttctgctccggc
tgcgtgctgccctgggtcgtccagcagagcagctgccccgtcaaatgtcagcgggtctcc
gccaaggagctgaaccacgtccttcccttgaagaacctcatcctgaagctggagatcaaa
tgtgacaaccacgcgcggggctgcgatgccgtggtgaggctgcagcatctggccgagcac
accgagatgtgcgattacgcgccggcgatgtgcaggaatcggggatgcggcgaggtgctc
gacccccgggacgtggacgtccacatgcgggagacgtgcgactgccgaccggtggggacc
tgcgagagcggctgcggcttgacgctcacccaccgggagcagaagtccgacggccactgc
tgcctgagagccctgaaggcgcacaacggcgcgctgcactgcaaagtcatcagcctggac
cgggagttcaagaagcagatgattcaagccaacaagagggagaagtctctcctggcgcaa
ctttccgccgtgcacggagagctgcagatgacagctctgaaataccagaagaaattcacc
gagtacagcgagaggatcgactccctcaccaaaaccgtggctttttcctgcaaggaaggc
gagactcaaagcgcgactgtcgtccttcttcgtgagggcggatctcttggttttaacatc
gtaggaggaaggccatgcgcggacgacagcgacagcccttcgaatgagggcatctttgta
tccaaggtcatcgaggaaggtccggcggacaaggacgagggccttcaaatccacgacaga
ataatagaggtcaatggcaaggacctctccaaggccacccacgaccaggcggtggaggcc
ttccgcaccgccaaggagcccatcgtggtccaggtcctgcgccgggccccgcatcccaaa
gcggtcgggggccccgccggtgacgcccgggtctcggacatcagcacgcagaccgacatc
accctccagcacatcatggccctgacgaagctcgcccccgcttcaccccccatgacggag
ctggaggagtatctgctgccagaggagcatcctccacatgcatactttgaccccaacgac
tttctggaggtcatgcagcaggacatagagcgcgaggagctggaatatgaggaagtggat
ttataccgagcccacatccaagacaagctcggcctgacgatctgttacaggaccgatgat
gaagacgaggccgggatctacattagtgagattgatccaaacagcatcgccgcgagggac
ggccgaatcagagaaggggacaaaatcattcagatcaacggcatcgagatccagaaccgg
gaggatgccgtctcactgctgaccagcgaggggaaccagaatgtctcgctgctggtggcc
cgacccgagatccagatggacgagggctggatggatgatgaccggaacgacttcctggat
gacctccacatggacatgctggagcagcagcaccatcaggccatgcagttcaccgccagc
atgctgcagcagaagaagcgcgaggaggacagcggcaccacggacacggccacgctgctg
tccaaccaccacgagaaggacagcggcgtcggccgcacggacgagagcacgcggaacgac
gagagctccgagcaggagaacctcggcgacgaccacaccacggcctccaacacgctgggc
agctgccggaagctcgcctacagccaggacacgctgggcagcggcgacctgccctacgcc
gacgccgacttcctcggcatcccggccgacgagtgcgagcgcttccgggaactcctggag
ctgaagtgccagatgcgcaacagcggagcgcagggcctctccgaccagggcggcccggac
caagagggcgcggacaaggagctggagatgctcaacgaggagctgcgcaccatcgagctg
gagtgcctgaacatcgtgcgcgcgcacaagatgcagcagctgcgcgagcagtgccgcgag
gcgtggtcgctgcacgacgacggcgccggcggcggcggccgcgagctctccgacatcacg
gagctgccggagaaatcggacaaagacagctccagcgcgtacaacaccggcgagagctgc
cgcagcacgccgctcacgctggagctgtctccggacaactcgctgcagcggggcgccgag
agccggggagcggcgggctccgacggccggctccccgagcctccgccgacccccggccga
gacgccggcggtcccggccggagcggtcgaggccccgccaaggattccgaggggccgccg
ccgtcaccgtcgccgccgccggcagaggacaaggagcggaagccgcattcgccgtacaag
cacgcccacatcccggcgcacgcgcagcactaccagagctacatgcagctgatccagcag
aggtcggccgtggagtacgcccagagccagatgagcctggcgagcatgtgccgcgacggc
ggcctggagcccaagatggagtggaaggtgaagatccgcagcgacggcacgcgctacatc
accaagcggccggtgcgcgacaagctgctgcgggagcgcgcgctgcgcatccacgccgag
cgcagcggcgtgaccacggacgacgacgccgtcagcgagctgaagatgggccgctactgg
agcaaggaggagcgcaagcagcacgccgtgcgctccaaggagcagcggcagcggcgcgag
ttcatgaagcagagccgggcggactgcctgaaggaggacgaccggagggagcccaacatc
atcgagctcagccacaagaagatgatgaagaggaggagtaagaagatattcgacaactgg
atgaccatccaggaactgttgacccacggggccaagtcgccggacggctcgagggtgtac
aactcgctcctgtccgtgaccacagtgtga
DBGET
integrated database retrieval system
