Pseudoliparis swirei (Mariana hadal snailfish): 130208803
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Entry
130208803 CDS
T09868
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04510
Focal adhesion
pswi04512
ECM-receptor interaction
pswi04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130208803 (col2a1b)
04518 Integrin signaling
130208803 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130208803 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130208803 (col2a1b)
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130208803 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
130208803
NCBI-ProteinID:
XP_056294109
LinkDB
All DBs
Position
18:complement(10732162..10777598)
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AA seq
1490 aa
AA seq
DB search
MFSFMDSRTVLLLVATQVCLLAVVRCQEDDQEDVISCLQDGQRYSDKDVWKPEPCRICVC
DTGTVLCDEIVCEDLNDCPKPEIPFGECCPICAADQAPPIGAPGGKGPKGEPGDITDVVG
PRGPGGPMGPLGEQGPHGPRGDKGETGSLGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEAGEPGQSG
PLGPRGPSGPAGKPGVDGEAGKSGKSGDRGAAGPQGSRGFPGTPGLPGIKGHRGYLGLDG
SKGETGALGSKGESGASGDNGTPGPMGPRGLPGERGRPGPSGVAGARGNDGLSGPAGPPG
PVGPSGSPGFPGSPGTKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIPG
SKGSSGSPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGESGPKGEFGPVG
LQGPLGPQGEEGKRGPRGDAGSAGPLGPPGERGSPGNRGFPGQDGLAGPKGAHGERGPSG
ASGSKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGASGEDGRPGPPGPQGGRG
QPGVMGFPGPKGASGEPGKSGEKGLGGALGLRGLSGKDGETGPSGPGGPSGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGAAGSHGLQG
PRGLPGTPGTDGPKGAIGPAGGGGAQGPPGLQGMPGERGGAGIPGPKGDRGDLGGKGPEG
APGKDGGRGLTGPIGPSGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFAG
PPGSDGQPGIKGEQGESGQKGEAGANGPQGPSGAPGPAGPTGVFGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGTAGPSGPSGKDGPKGVRGDGGPSGRRGDAGLRGPAGTSGEKG
DAGEDGPSGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSTGGSGDRG
PPGSVGPPGLTGPSGELGREGNAGSDGPPGRDGATGTKGERGNTGPAGAPGASGAPGASG
PVGATGKQGNRGESGAQGPSGSSGPSGARGMPGPQGPRGDKGEGGEGGERGQKGHRGFTG
LQGLPGPPGQSGDQGATGPSGPSGQRGPPGPVGPSGKDGGNGQPGPIGPPGPRGRGGDTG
PSGPSGNSGPPGLPGPPGPGIDMSAFAGLGQMEKSPDPLRYMRADQASGNLRQHDAEVDA
TLKSLNNQIENIRSPEGSRKNPSRTCRDLKLCHPDWKSGDYWIDPNQGCTIDAIKVFCNM
ETGESCVKSNPASIPRKNWWSSKSKDRKHVWFGETMNGGLHFSYGDDSLAANTAAIQMTF
LRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMEDG
CTKHTGKWGKTVMEYRSQKTSRLPIVDIAPMDIGGTDQEFGVEVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattcgaggactgtactgctacttgtagcaacccaagtgtgtcta
ttagccgttgtaagatgtcaagaggacgaccaggaggatgtcattagctgtttacaagat
ggacagcgctatagcgacaaggacgtgtggaaaccagagccttgtcgcatctgtgtgtgt
gacactggaaccgtcctgtgtgatgaaattgtctgcgaggatctaaacgactgccccaaa
cctgaaatcccatttggagagtgttgccccatctgcgcagctgaccaggctccacccatt
ggagcacctggaggcaagggtccgaaaggtgaacccggagacattaccgatgttgtagga
ccaagaggaccaggtggcccaatgggcccactaggagagcaaggaccccatggaccgaga
ggagacaagggagagacgggaagccttggtcctcgtggcagagatggtgagcctggcacc
cctggaaaccccggcccccctggacctccaggacctaatggaccccctggccttggtgga
aacttcgccgctcagatggccggtggttttgacgagaaatctggcggcgcacagatgggt
gtgatgcaaggaccaatgggcccgatgggtcccagaggaccacctggccccagcggatca
cctggcccacaaggtttccaaggcaaccctggagaggctggagagcccggacagtccggc
cctctgggtccccgtggcccctccggacctgctggaaaacccggagttgatggtgaggct
ggcaagtctggcaaatcaggcgaccgtggagctgctggacctcagggatctcgtggattc
ccaggaactcctggcctgcccggcatcaagggccacagaggttatctcggtcttgatgga
tcaaagggagagacgggagctcttgggtccaagggagagtccggtgcttccggagataat
ggcactcctggacccatgggccctcgtggtttgcctggtgagagaggtcgtcctggaccc
agtggagtcgctggagcacgtggaaatgatggcttgtccggtcctgctggacccccaggc
cctgtcggcccctctggatctccaggcttccctggctctccgggtacaaagggagaagct
ggtcctactggtgcccgtggtcctgagggtgctcagggaccccgtggagagtctggaaca
cccggatcatccggaccttctggtgcttctggaaaccctggtactgatggaatccctgga
tccaaaggatcatctggttctcctggtattgctggcgctcctggtttccctggacctcgt
ggacctcccgggcctcagggagcaactggacctctcgggcccaaaggaacatctggagac
ccgggtatcccaggcttcaagggagagtctggacccaaaggagaatttggaccggttggt
ctgcagggacctcttggcccacaaggagaagaaggcaagagaggacccaggggtgatgct
ggttctgctggaccacttggacctcctggagagagaggatctcccggtaaccgtggtttc
cctggtcaagacggtctggctggtcccaagggagcccatggtgagcgtggaccctctggt
gccagtggttccaagggtgccaacggtgaccccggccgtccaggagagtctggtcttccc
ggtgccagaggcctgactggacgcccgggtgacgctggtcctcaaggcaaagttggacct
tctggcgcttctggtgaggacggtcgtccgggaccccccggtccccaaggaggccgtgga
cagccgggtgtcatgggattccccggacccaagggagcatctggtgaaccgggcaagtct
ggcgagaaaggactgggtggagctcttggtctgagaggtctgtctggtaaagatggagag
actggcccttctggacccggcggcccttctggccctgctggagagagaggagaacaagga
cagcctggtccctcaggtttccagggtctgcctggacctcctggcccacctggtgaggga
ggaaagcctggagaccagggtgttcctggagagggtggtgctgctggtgctactggaccc
agaggtgagcgtggtttccccggagagagaggagctgccggctctcatggtctgcaggga
cctcgaggtctgcctggaactcctggaacagacggacccaagggagccattggacctgct
ggtggcggtggagctcagggaccccctggcctgcagggcatgcccggagagagaggagga
gctggcattcctggacccaaaggagacagaggtgacctcggagggaaaggacctgaaggt
gctcctggcaaagatggcggcagaggtctcactggtcccattggtccttctggtcctggt
ggtcccaatggcgagaagggtgaatctggtcctgctggtccttctggagctcctggtacc
cgcggcgctcctggggacaggggggagactggacctcctgggcccgctggatttgctgga
ccacctggttctgacggtcagccaggaatcaaaggagagcagggagaatctggacagaag
ggtgaagctggggccaatggaccccagggaccatctggtgcccctggacctgcaggtcct
accggtgtttttggacctaaaggtgctcgtggtgctcagggacctcctggagccactgga
ttccctggtgctgctggccgagttggaccccctggtcccaatggaaatcctggaactgct
ggtccttccggcccctctggtaaagatggccctaagggtgtgaggggagatggtggaccc
tcgggccgacggggtgatgccgggctccgtggtccagctgggacttctggagagaaggga
gatgctggagaggatggtccctctggtcccctcggaccttcgggtcctcagggtttggcg
ggtcagcgcggtatcgtgggtttgcccggacagcgtggtgagcgaggcttccctggtctg
cctggaccttctggtgagcccggaaagcaaggatctactggtggcagtggagaccgcgga
ccccccgggtctgttgggccacctggactcactggtccttcaggagagcttggcagagag
ggcaacgctggatctgatggacctcccggtagagatggtgcgacaggaaccaagggtgag
cgtgggaacactggtcccgctggtgctcccggtgcttcaggcgctcctggtgcttccggc
ccagtcggtgccaccggcaaacagggaaacagaggagagtctggtgcacaaggaccttct
gggtcttctggaccttctggagccagagggatgcctggaccccaaggaccccgcggtgac
aagggagagggtggagagggtggagagagaggacagaagggacacagaggcttcactggt
ctgcagggtctgcccggacctccgggtcaatctggagatcagggtgctactggaccctct
ggaccttctggacaaagaggaccacctggacctgttggcccgagtggaaaggatggtgga
aacggtcagccaggacccatcggaccccccggacctcgtggtcgcggaggagacaccggt
ccctctggtccctctggaaactctggaccccccggtctccctggtccccctggccctggc
attgacatgtccgcctttgctggtctgggtcagatggaaaagtcccctgatcctctcagg
tacatgagggccgaccaggcgtcaggaaacctccgtcagcacgatgccgaggtcgacgcc
acgctcaaatctctcaacaaccagatcgagaacatccgcagcccggagggatccaggaag
aacccgtctcgcacctgcagagacctcaagctctgccatcctgactggaagagcggagac
tactggattgatcccaatcagggctgcaccatcgatgccatcaaggtcttctgcaacatg
gagacaggagagtcctgcgtaaaatccaacccggccagtatccctcgcaagaactggtgg
tccagcaagagcaaagaccgcaaacatgtctggttcggagagacaatgaatggaggcctc
cacttcagctatggcgatgacagcctggcagccaacactgctgccattcagatgactttc
ctgagactgctgtctaccgaggcttctcaaaacctcacttaccactgtaagaacagcgtg
gcctacatggacgcctcaacgggcaacctgaagaaggccgttctgctgcagggctccaac
gacgtggagatcagagccgagggcaacagccgcttcacttacagcgtgatggaggacggc
tgcacgaaacacacgggaaagtggggcaagacagtgatggaatacagatcgcagaagacc
tctcgtctgcccatcgtagacattgcccccatggatattggaggaacagaccaggagttc
ggagtcgaagtgggagcagtctgcttcttgtaa
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integrated database retrieval system
