Pseudoliparis swirei (Mariana hadal snailfish): 130208887
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Entry
130208887 CDS
T09868
Name
(RefSeq) calphotin isoform X1
KO
K19553
homeobox protein TGIF2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
130208887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130208887
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
130208887
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
Motif
Other DBs
NCBI-GeneID:
130208887
NCBI-ProteinID:
XP_056294253
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Position
18:28492512..28499386
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AA seq
544 aa
AA seq
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MFLQPVQTKTITTTTITTHVPSSSSALEEEHRPDQEQNSSAVSDSDDGGGGGGSPLDLSG
RGGLFGKRRRRGNLPKEAVQTLRSWLYEHRFNAYPSEQEKLSLSGQTHLSVLQICNWFIN
ARRRLLPDLLRKDGKDPTKFTISRKVGGKSDVHAATHGGGASSPESTSSSSAAAGSSQQR
PSVIRAAPTLDLVLLGSTATAILTGAGYPGKGGSVQALMRLDTQSLLREAEEQGAGTVCL
AGAATPMAASAGLFNTPPPTPPELLPAQDFSDLRLLVDAALQRAAEQENLKRESGPAAGA
VKTEPAEYGDSGATPPPEDGQQVMDPTRVQRLMETAMAVTAGKDPLPLRSLAASVPVPAP
RLSPLLMNKVLWSPVETDASPPQLAAAHLLKPAAVGPAPLVPATSPAGAAHPRTVAPAPP
PAVASSFPNARAISLYRPFHMSPIFPARVPSSPAPVHGPVRTSTPAPLAAAAQMSSSTPP
MMPLLGLTAPLQPSSSSSSTSRSSAVVPSVWSMVQPGSLQGVKTPIPAVWGPQHSLHTVS
EAVN
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgcagccggtccagacaaaaacaataacaacaacaacaataacaacacatgtg
ccttcctcctcctcagctctggaagaggagcaccggccggaccaggagcagaactcctcc
gccgtgtcggacagcgacgacggcggcggcggcggcggctccccgctcgacctgtcgggg
agggggggtctcttcgggaagcggcgtcgccgcggcaacctgccgaaggaggcggtgcag
acactgcgcagctggctgtacgagcaccgcttcaacgcctacccgtcggagcaggagaag
ctgagcctgtcgggccagacccacctctccgtgctgcagatctgtaactggttcatcaac
gcccggcgccgcctgctgccggacctgctccgcaaggacggcaaggaccccaccaagttc
accatctcccgcaaggtcggcgggaaaagcgacgtccacgccgcgacccacgggggcgga
gccagctcacctgagagcacctcctcctcctccgccgccgccggctcgtctcagcagcgg
ccgtccgtgatccgcgccgccccgacgctggacctcgtcctcctcggcagcacggcgacc
gccatcctgaccggcgccggctacccggggaagggcggctcggtccaggcgctgatgagg
ctggacacccagagtctgctgagggaggcggaggagcagggggcgggcaccgtttgtctc
gccggcgccgccacgccgatggccgccagcgccggcctcttcaacacgccgccgccgacg
ccccccgagctgctccccgcccaggacttcagcgacctgcggctcctggtggacgcggcg
ctgcagcgggcggcggagcaggagaacctgaagagagagagcggacccgccgccggcgcc
gtgaagaccgagccggccgagtacggcgactcgggcgccacgccgccgccagaggacggc
cagcaggtcatggacccgacccgggtgcagcgcctgatggagacggccatggccgtgacg
gcggggaaggatccgctgcccctccggtccctggcggcctccgtgccggtcccggcgccg
aggctttctcctctcctgatgaacaaagtcctctggagccccgtggagacggacgccagc
ccgcctcagctcgccgccgcccacctcttgaaaccagccgccgtcggcccggcgccgctc
gtcccagccacgagtcccgccggcgccgctcacccccggactgtggcgcccgctccgccg
ccggccgtcgcctcttctttcccgaacgccagggcgatctcgctctaccggccgttccac
atgtcgcccatcttcccggcccgcgtgccgtcgtctccggcgccggtccacggcccggtc
cgcacgtcgactccggctcctctggccgccgcggcccagatgtcctcctctacgccgccg
atgatgcctcttctgggcctcactgctccccttcagccctcctcttcctcctcctccacc
agcaggagttctgccgtggtgcccagcgtttggagcatggtgcagcccggttctctccaa
ggggtgaagacccccatccccgcggtgtggggtccgcagcacagcctgcacaccgtgagc
gaagcggtgaactag
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