Pseudoliparis swirei (Mariana hadal snailfish): 130208998
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Entry
130208998 CDS
T09868
Symbol
lmo7a
Name
(RefSeq) LIM domain only protein 7 isoform X1
KO
K06084
F-box protein 20
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
130208998 (lmo7a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130208998 (lmo7a)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
130208998 (lmo7a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
PDZ
PDZ_6
LIM
PDZ_2
Motif
Other DBs
NCBI-GeneID:
130208998
NCBI-ProteinID:
XP_056294458
LinkDB
All DBs
Position
2:complement(2576818..2627588)
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AA seq
1496 aa
AA seq
DB search
MEWRERSAVSCDEAYVEAQRWIEAVTEKKFGSEDFRSALENGVLLSELINQISPGVIRRV
NRLPTPIAGLDNLNVFLKACRKLGLKEAQLFHPGDLQDLSTRVTVKHQETNRRLKNVLIT
IYWLGRRAQCDRLYDGPYLDLKAFEGLLGAALSKALQETSGQKGGRDSGFGDSWCSEREE
LFQLKEGGGPRRDDSPDSLDSLSSRPHSISSDSTLKGSREGCCSDPEADSVVRMAENKSG
LSYRRSVTLTPKATSQFNQFLPTKDKSMAYVPAPLRKKRAERNEDSRRSWANPAYSEDDA
TLTRQQQVPESIEGSKSTSDILADSGVDRQSRYEDLQKQREQIKDTDDKWQDDLSKWKNR
RRSVNSDIVKKKEEREKTEQDTSGGRRSKTLREMQEERENKGKNSVGSRFGSLSYLDDEV
VFDQAVPSARPRTLPARSFTVDAPFYSSQSPEPPLKEDRPPPAAADPPATGRAAFPPTSQ
GVETLDSPAGRVTTTTASASASASRSFSHRSQPPAAEAPLPSPVSVRRGTGEAEEPAAAV
SSRSAPPPPKGPEPRRPLLHRQAEAPSSGSPYEQRPQPGSMEPKPPGASRVSASLPRNYQ
RPDSARLTSIVAPRPFGTQSSRLASLPRAVTVDDPQKRVNGDAAAGKPVVPSRYQQFAEE
DERRSQSGSAHSSEEEEEEEEEEEEEGEGKTYPQSVSSPQSVSSPQAKTAAPLSPAPAKE
TSQENFCESRISLNQKPNSSRDFGFQAAWDSTGARVASIQPGSPAEMCPLQVGDEVLTVN
GRQVAEMSYTGWKSCMEEALQEGSLVMDIRHHGRNSWDRAPPPSPFTVHKTINLTSVVHP
VLLGSPEAVGPILDFTSGASVEKLPHREAAAHPVLDVTSNGVNGGFREQEVTMRSKDSEP
ISMKNLKRRSEFFEKGVSGPRVSALVYLCGGSESAMPDIPVPSIIPSSSRWSWDPEEERK
RQEKWQKEQERLLQEKYKRDQEKLQEEWLKDQEEVARSADQQEEVSSGGPLSYLSPAGRP
ATPPWVEQERKRKQELEGLRQAEEKRKREEEERKRREEIERLRQAEERRMRDEEERDLRR
LQEERETRDRQQQQEEERKSREEEELRWQRRKEEEREEEKRRWQEAAEQQQQRREEERAL
AEQQRAASFASVTPSLSFTDRMKSQSSPQLDEEEKPPSKGVFVRPGVSALRQEEEEEQAR
SARDKEARSQRAASELEMERRNILNIMRYREPERATGAVAAEKKAQLSASQAEQERQQIL
NEMKKKTPLLMDRSWIRQRSAAAAAAAAAEESDGPPMRRGESLDNLDASYNSWRSSWTPR
GNAYAQGHARPNSALSGGAGFYGGGAAAAGVQRPVSSALPSSYSMGSLRAGVGGPPPSSS
SSSSSSSPWCRQSPSPSPSPATSPDTTSEGGGPPQQRSRSVSGRKVCTFCDTPLGKGAAM
IIESLGLCYHLTCFKCIDCKCDLGGSAAGAEVRIRNKHLFCNACYTRFKAGQPTTM
NT seq
4491 nt
NT seq
+upstream
nt +downstream
nt
atggaatggcgcgagcggtccgcggtcagctgcgacgaagcctacgtggaggcgcagagg
tggatcgaggcagtcacagagaaaaaattcgggagcgaggacttccgatcggcgctggag
aacggagttctgctgagcgaactgatcaaccagatctcgcctggtgtcatcaggagggtc
aaccggctgcccacacccatcgccggactggacaacctcaacgtcttcctcaaagcctgc
aggaagctcggactaaaggaggcgcagctcttccacccgggggacctccaggacttatcc
accagagtcacagtcaagcatcaagagacgaacaggaggctgaaaaatgtgctgatcacc
atttactggcttggtagaagagctcagtgtgaccgtctctacgatggaccctacctggac
ctgaaggcctttgagggcttgctgggcgccgcgctgtccaaggctctgcaggaaacgtcc
ggtcagaaaggcggcagagacagcggttttggagacagctggtgctcagagcgagaggag
ctcttccaactgaaagagggaggaggacccaggagagacgactccccagacagcttggac
tctttgagctcccgaccacacagcatctcctctgactccactcttaaaggcagccgcgag
ggttgttgcagcgacccggaggccgactccgtcgtcaggatggccgaaaacaagagcggt
ctcagctaccgccggtcggtgaccctcacgcccaaggccacgtcccagtttaaccagttc
ctgcccaccaaagacaaatccatggcctacgtgcccgctccgctgaggaagaaacgggcc
gagcgcaacgaggacagccggcgcagctgggccaacccggcgtactcggaggacgacgcc
accctcaccagacagcagcaagtgccagagagtatcgaagggagtaaatcaaccagcgac
atcctggcggactccggcgtcgaccggcagtctcgctacgaggatctgcagaagcagcgc
gagcagataaaggacacggatgataagtggcaggatgacctgagcaaatggaagaaccgg
cgccggagcgtcaactctgacatcgtgaagaagaaggaggagagggagaagacggagcag
gacacgtccggcggcaggaggtccaagaccttacgggagatgcaggaggagagggagaat
aaagggaagaacagcgtcggcagtcgcttcggttctctgtcttacctggacgacgaagtc
gtgttcgaccaagcggtcccctccgcccggccccgaacgctccccgcccggagcttcacc
gttgacgctcctttctattcctcccaatcccccgagcctcctctgaaagaggaccgaccc
ccccccgccgccgccgaccccccggctaccggcagggccgctttccctcccacctcacag
ggggttgagactctggacagccctgcaggcagggtcaccaccaccaccgccagcgccagc
gccagcgccagccgcagcttttcccacaggtcccagcctccggcagctgaagcaccgtta
ccgagtccagtctctgtacgccgcggcaccggagaggcggaggagccagcggccgccgtc
tcctctcggagcgccccgccgccgccgaaggggcccgagccgaggcgcccattgttgcac
cgacaggccgaggccccctcctccggttctccgtacgaacagcgaccgcagcccggctcc
atggaacccaagcctcccggggcgtctcgggtgtccgcctccctgcccaggaactaccag
agaccggatagcgctcgtctgacctccatcgtcgcgccgcggcccttcgggacccagtcg
tcccgcctcgcctctcttccccgagccgtgacggtggacgacccccagaagcgcgtcaac
ggcgacgccgccgccggcaagccggtggtgccgagccgctatcagcagttcgcggaggag
gacgagcgccggtctcagtccggctcggcccacagcagcgaggaggaggaggaggaggag
gaggaggaggaggaggaaggagagggcaagacttatcctcagagcgtctcctctcctcag
agcgtctcctctcctcaggccaagaccgcagccccactcagtccggctccagccaaagaa
accagccaggagaacttctgcgagtcgcgcatcagcctgaaccagaagcccaacagcagc
agagactttggcttccaggcggcctgggactccaccggagctcgcgtggcgtccatccag
ccaggcagcccggccgagatgtgcccgctccaggtcggggacgaggtgctgacggtgaac
ggccgccaggtggcagagatgagctacacgggctggaagtcctgcatggaggaggcgctg
caggagggcagcctggtcatggacatacggcaccacggcaggaacagctgggacagagct
ccgcccccctcgccgtttacagtccataagaccatcaatctgaccagtgtggtccatccg
gtgcttctaggttcccccgaggccgtcggccccatcctggacttcacctcgggcgcctct
gtggagaagctgccgcacagagaggccgccgcccacccggtgctggacgtgacttcaaac
ggagtcaacggaggtttccgtgagcaggaggtgacgatgaggagcaaagactcagaaccc
atatctatgaaaaacttaaaacggaggtcagagttttttgaaaaaggtgtctcggggccc
cgtgtcagtgcgctggtctacctctgtggaggatcagagtccgcgatgccagatatcccc
gtcccctccatcatcccgtcctccagccgctggtcctgggacccggaggaggagcgcaaa
agacaagagaaatggcagaaggagcaggagcgcctcctacaggagaaatataaacgcgac
caggagaagctgcaggaggagtggctgaaggaccaggaggaggtggccaggagcgccgac
cagcaggaggaggtgagctccggcggtccactctcgtacctttctcccgccggccggccg
gccacgcctccatgggtggagcaggagagaaaaaggaagcaggagctcgagggcctgcgg
caggcggaggagaagaggaagagggaggaggaggagaggaaacggagggaggagatcgag
cgcctgcggcaggcggaggagaggaggatgagggatgaggaggagcgcgacctgcggcgg
ctccaggaggagagggagacgagagacaggcagcagcagcaggaggaggagaggaagagc
agggaggaggaggagctgaggtggcagcgcaggaaggaggaggagagggaggaggagaag
aggcggtggcaggaagctgcggagcagcagcagcagcgcagggaggaggagagagccttg
gcggagcagcagagggccgccagctttgccagtgtgactccgtccctgtccttcactgac
aggatgaagtctcaatcatctccccagcttgatgaagaggagaagcctccaagtaaaggt
gtgtttgtgcggccgggggtctcggctctccggcaggaggaggaggaggagcaggcgagg
agcgcccgcgacaaggaggcccggagtcagcgggcggcgtccgagctggagatggagagg
aggaacatcctcaacatcatgagatacagagagcccgagagagcaacgggcgccgtggcg
gccgagaagaaggctcagctgtcggcgtcgcaggcggagcaggagcgccagcagatcctc
aacgagatgaagaagaagaccccgctgctgatggacaggagctggatccgccagcgctcc
gccgctgccgccgccgccgccgccgccgaggagtccgacgggccccccatgcgcagaggc
gagtctctcgacaacttggacgcctcctacaactcgtggcgctcgtcgtggacgcccaga
ggcaacgcctacgcccagggccacgcccggcccaactcggcgctgtccggcggcgccggc
ttctacggcggcggggcggcggcggcgggggtccagcggcccgtctcctcggccctgcct
tcctcctactccatgggctccctgcgggccggggtgggaggcccccccccctcctcctcc
tcctcctcctcctcctcctccccttggtgccggcagtcgccgtcgccctcgccgtcaccc
gccacctccccggacaccacgtctgagggcggaggccccccgcagcagcggagcaggtca
gtgagtggcaggaaagtgtgtacgttctgtgacaccccgctgggcaagggagcggccatg
atcatcgagtcgctcgggctttgttatcatttgacctgcttcaagtgcatcgactgcaag
tgtgacctcggagggtcggcagccggcgccgaggtcagaatacgaaacaagcatctcttc
tgtaacgcctgctacacgcgattcaaagccggccagccaaccaccatgtga
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