Pseudoliparis swirei (Mariana hadal snailfish): 130209213
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Entry
130209213 CDS
T09868
Symbol
ppargc1b
Name
(RefSeq) LOW QUALITY PROTEIN: peroxisome proliferator-activated receptor gamma coactivator 1-beta
KO
K17962
peroxisome proliferator-activated receptor gamma coactivator 1-beta
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
pswi03029
]
130209213 (ppargc1b)
Mitochondrial biogenesis [BR:
pswi03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Coactivators
130209213 (ppargc1b)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
eIF-3c_N
Motif
Other DBs
NCBI-GeneID:
130209213
NCBI-ProteinID:
XP_056294697
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Position
19:26769245..26851619
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AA seq
883 aa
AA seq
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MADCAPLLDEELSSFVFNYLTENSGSQYGEEEVCSDRLDNDFPDIDLSQLDTSDFDSVNC
LSELQWCNDQPAGASPASIRYSAADELFEIEEENAALLAALTDSLDGMVDAEVGGLSVFP
ALGEGPDGEGDDEDDDLPLDFSQSMGAETDDPSLLKQLLLTPPNVPAAATTTAAAAAHKQ
RAHGHRYSNRSLQLRPTRPPVKSDLRQDRKPRAVRPAGRLCTELHRHLTTAPDTEEDEEE
EEEDDEDDSESEDDDEEEEESSGGEVECAAAATPTPPPASAPPAEPAPPQFGSEKELRSV
VELITYMHTYCLPARKQQGWERKERDAPRPRARAEAPRPAAARVVLVGGAAPRRLPFARR
REAKADSLLRELLQQSGCYDVSQPYRLHGPPYAHPHGAARPAHAGAARSAAPKPSAWRKD
SSSPERRSRSHEALRSHEDAEAAAEDGGSFSVRRSRRLASFPSRFAERLRPGRARDGERR
EEREAKLLLTHAGGRTTATERLAASSERDEPCCHHEKRGCLCLTFDPKTTGESQYSTKPF
EQTLGVDLCGTAGLTPPTTPPHKPVEDELFKPAEGGKDEGGGDLSASSAAASSRPSRAPH
RQRKLPQQTELYAQLRRTGQAGDDTHRAFGDHDYCALSLGESRERSAAMLGAILQAQGGG
RPARDAEDRAAXRRTDGGGERTAASGGGGQPERQSAAPAVSPSTPLPISTATASAATPPV
SEEEAERSSASRSPSPILHLRADSPASKTDSSENSEICPDDKQRNKAKSDEDNCQVFYIH
NLPTSVTQNMLRKRFQVFGKPEDCKVIICNEERCGVIKIRQTGVQKHWRERETVFQNEPP
GLRRLARKRYIDLDEAGPGPVKSKYDALDFDTLLKEAQKSLHR
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggcggactgcgctccactattagatgaggaactctcgtccttcgtcttcaattacctg
acagagaactccggcagccagtatggggaggaggaggtgtgttcggaccgcttggacaat
gacttcccggacatcgacctctcccagctggacaccagcgacttcgacagcgtcaactgc
ctcagcgagctgcagtggtgcaacgaccagccggcgggcgcgtcgccggcctccatccgc
tacagcgcggcggacgagctcttcgagatagaagaggagaacgcggcgctgctcgccgcg
ctgaccgacagcctggacggcatggtggacgccgaggtgggcgggctctccgtcttcccc
gccctcggcgaggggcccgacggcgagggcgacgacgaggacgacgacctgccgctcgac
ttcagccagtccatgggggcggagacggacgacccctctctgctgaagcagctcctgctg
actcctcccaacgttcccgccgccgccacgaccaccgccgccgccgccgcacacaaacaa
cgagcccacggccatcgctatagcaacagaagcctgcagctccggcccacgaggcccccg
gtcaagagcgacctccgtcaggaccggaagccccgggcggtgcgcccggcgggccgcctg
tgcaccgagctccaccgccacctcaccacggcgccggacacggaggaagacgaggaggaa
gaagaagaggacgacgaggacgacagcgaatcggaggacgacgacgaggaggaggaggag
tcctccggcggcgaggtggagtgcgcggcggccgcgacgccgaccccgccgccggcgtcg
gcgccgcccgccgagccggcgccgcctcagttcggctccgagaaggagctgcgctcggtg
gtggagctcatcacctacatgcacacctactgcctccccgcgcgcaagcagcagggctgg
gagcgcaaggagcgcgacgcgccgcggccccgcgcccgcgccgaggcgccgcgccccgcc
gccgccagggtcgtcctggtgggcggcgccgcccccaggaggctgcccttcgccaggagg
cgggaggcgaaggccgactccctcctccgcgagctcctgcagcagagcggctgctacgac
gtgagccagccttacagactgcacggccccccctacgcccacccgcacggcgccgcgagg
cccgcccacgccggcgcggccagatccgccgccccgaagccctcggcgtggcgtaaagac
tcctcgtcccccgagaggagaagccgctcccacgaggcactccggagccacgaggacgcg
gaggcggcggcggaggacggcgggtccttctccgtccggcgctcgcgccgcctggcgtcc
ttccccagccgcttcgccgagaggctgcggcccggccgggcgagggacggggagaggagg
gaggagagggaggcgaaactcctgctgacgcacgccggaggccggaccacggcgacggag
cggctggcggcgagcagcgagcgggacgaaccgtgctgccaccacgagaagcgaggctgc
ctctgtctgaccttcgaccccaaaaccaccggggagtcccagtacagcaccaagcccttc
gagcagacgctcggcgtggatctgtgtggaacggcaggtctgactccgcccaccaccccg
ccccacaagccggtggaggacgagctcttcaaaccggcggagggaggaaaggacgaaggc
ggcggcgacctctcggcctcgagcgccgccgcctcgtcccggccgagccgcgcgccgcac
cgccagcggaagcttccgcagcagacggagctgtacgcccagctgcggcgcacgggccag
gcgggcgacgacacgcaccgcgccttcggcgaccacgactactgcgcgctgagcctcggc
gagagccgcgagcgcagcgccgccatgctgggcgccatcctgcaggcgcagggcggcggc
cggccggcccgagacgccgaggaccgggcggcgnggcggcggacggacggcggcggcgag
aggacggcggcgtcggggggcggcgggcagccagagcggcagagcgccgcgccggcggta
tcgccgtcgacgccgttgccgatatcgacggcgacggcgtctgccgccacgccgccggtc
tcggaggaagaggcggagcgctcgtccgcgtcccgctcgccctcgcccatcctccacctc
cgcgccgactcccccgccagcaagacggactccagtgagaactctgagatctgccccgac
gacaagcagaggaacaaagccaagtctgacgaggacaactgccaggtgttctacatccac
aacctgccgaccagcgtgacccagaacatgctgcggaaacgcttccaggtgttcggcaaa
cccgaggactgcaaagtcatcatctgcaacgaggagcgctgcggggtgataaagatccgc
cagacgggggtccaaaagcactggagggagcgggagaccgttttccagaacgagcccccg
ggcctcaggaggctggcgaggaaacgctacatcgacctcgacgaggcgggtccgggtccc
gtgaagagcaagtacgacgccctggacttcgacactctgctgaaggaggcccagaagtcc
ctgcaccgctga
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