Pseudoliparis swirei (Mariana hadal snailfish): 130209224
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Entry
130209224 CDS
T09868
Name
(RefSeq) CCR4-NOT transcription complex subunit 8-like
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130209224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130209224
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130209224
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130209224
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
EKR
Motif
Other DBs
NCBI-GeneID:
130209224
NCBI-ProteinID:
XP_056294713
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Position
19:complement(86571..97223)
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AA seq
285 aa
AA seq
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MPAALTDSSQIICEVWASNVEEEMRKIRQIIQSYNFIAMDTEFPGVVVRPIGEFRSTVDY
QYQLLRCNVDLLKIIQLGLTFMNEDGDYPLGTTTWQFNFKFNLTEDMYSQDSIDLLQNSG
LQFKKHEEEGIETLYFAELLMTSGLVLCENTKWLSFHSGYDFGYLVKLLTDTRLPEEEHD
FFQILNLFFPAIYDVKYLMKSCKNLKGGLQEVADQLELKRIGRQHQAGSDSLLTGMAFFR
MKELFFEDNIDDAKYCGRLYGLGSGSTQPQNGLSGSGQEETNNKH
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgccggccgcactgacggattccagtcagataatctgtgaagtctgggcgagcaacgtg
gaggaggagatgaggaagatccgacaaatcattcaaagctacaacttcatcgccatggac
acggagttccccggcgtggtggtccggcccatcggagagttccgcagcaccgtggactac
cagtaccagctgctgcgctgcaacgtggacctgctgaagatcatccagctgggcctcacc
ttcatgaatgaggacggggactatcctctgggcaccaccacctggcagttcaacttcaag
ttcaacctcacagaagacatgtactcgcaggactccatcgacctgctgcagaactccggc
ctccagtttaagaaacacgaagaagagggaatagagacgctctacttcgcggagctgctc
atgacgtccggcctggtgctctgtgagaacaccaagtggctctccttccacagcggctat
gacttcggctacctggtgaagctcctgaccgacacgcggctcccggaggaggaacacgac
ttcttccagatcctcaacctgttcttccccgccatctacgacgtcaagtacctgatgaag
agctgcaagaacctgaagggaggcctccaggaggtagcggaccagctggagctgaagcgg
atcgggcgtcagcaccaggccggatcggactcgctcctcaccggcatggcgttcttcagg
atgaaagagcttttcttcgaagacaacatcgacgacgctaagtactgcggccgtctgtac
ggcctgggctcgggctccacgcagccccagaacgggctgtccggctcgggccaggaggag
acgaacaacaagcactga
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