Pseudoliparis swirei (Mariana hadal snailfish): 130209258
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Entry
130209258 CDS
T09868
Symbol
col23a1a
Name
(RefSeq) collagen alpha-1(XXIII) chain isoform X1
KO
K24355
collagen type XXIII alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130209258 (col23a1a)
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130209258 (col23a1a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
130209258
NCBI-ProteinID:
XP_056294775
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Position
19:complement(12846154..12861749)
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AA seq
535 aa
AA seq
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MGQTPSLSFLFRLPASKTAELSSVFSHSSYFPLGWILICSLLINDWFLVSVLIYPFLFPI
LFVLQHAPCPTLSLSLFPLFPFSPEFLLLVPAAPLASQMVFPRYDHGFLSGEQSGSFQRR
FLKGDQGQAGPAGPPGPPGPPGPRGPPGNTGKDGPRGPAGESGFPGRDGVEGLKGLPGKP
GVDGESGYPGPHGPPGPKGESGIGGKGERGMDGLPGLKGDKGEIGEQGQQGAMGFPGEKG
ATGSSDIIDFNGKLLDAFQAIDTISVSGPSGPPGPPGPSGEKGELGLPGPAATDGEKGPN
GDTGETGPPGERGGRGEMGLSGPAGMDGYKGEKGDCRMEDNLVQMISQPGPAGPPGVPGS
PGSMGLHGMPGPKGEPGFGMKGDKGDSGAPGARGLDGLQGTSGPAGLVGLPGAKGDKGRP
GDHGLDGFPGLTGGKGERGERGDKGDRGSVGKRGLKGQKGEQGPPGLDQPCPVGCNESNG
VSQEARLSSPPSPLLTPSGTEPPCPVGQDGLPIPGCWHKEEMARQKLKRKCLSQP
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgggccaaacaccctccttaagctttctctttcggcttccagcttcaaagaccgctgaa
ctctcatctgttttttcccacagcagttatttccctcttggttggattctcatctgcagt
ctcttaattaacgattggtttctggtttcggtactcatttatccctttctctttcccatc
ttgtttgtccttcaacatgctccatgtcccaccctctctctctctctctttccactattt
cctttttctcctgaatttctacttcttgtccctgccgcacctcttgcatctcagatggtc
tttcccagatatgaccatggctttctctctggagagcagtccggtagttttcagagacgc
tttctgaagggtgaccaaggccaggctggacccgctggtcctcctggtcctccaggtccc
ccaggtcccagaggcccccctgggaacacaggcaaggacgggccacgtgggcctgctggc
gagtcggggtttccaggtcgtgatggcgttgaggggctaaaaggattgcctggaaagccg
ggagtagatggggagtccggctatccgggaccacacggtcctccaggaccgaagggcgag
tccggtatcggaggaaaaggagagaggggcatggatggactcccaggattgaagggagac
aaaggggaaataggagagcaaggacaacagggagccatgggttttcctggtgaaaagggc
gcaacgggctcctcagacatcattgacttcaatgggaagcttctagatgctttccaggcc
atcgacaccatcagtgtttcgggtccatctggaccacctggaccccccggcccttcaggg
gaaaagggtgagcttggtttacctggcccagcagcaaccgatggggagaaggggcctaac
ggggacacgggtgagacgggaccccctggtgagagaggagggaggggagagatggggctc
tctgggcctgctggtatggacggatacaaaggagagaaaggtgactgcagaatggaagac
aacctggttcagatgatttcgcagccaggcccagctggcccaccaggggttcccgggtcg
cctggatctatggggctgcatggtatgcctggtcctaagggtgagcctggatttgggatg
aagggagataaaggggactctggtgctcctggagccagaggattagacggtctccagggc
acaagtgggcctgcagggttagtgggtcttccaggtgcgaagggagacaaaggcagacca
ggggaccatggactagacggtttcccaggtctgaccggagggaaaggtgaacgaggggaa
aggggagacaagggtgaccggggatcagtgggaaagaggggtctaaagggccagaaggga
gagcagggtcctccaggcctggaccagccctgtcctgtgggttgcaatgagagtaacggt
gtgtctcaggaggcaaggctttcttctcctccatctcctcttcttactccttccggcact
gagcccccctgtcctgtgggacaggatgggctgcccataccaggctgctggcacaaggag
gaaatggcgagacagaagctcaaacgcaagtgtctctctcagccctga
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