Pseudoliparis swirei (Mariana hadal snailfish): 130209344
Help
Entry
130209344 CDS
T09868
Symbol
syvn1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04120
Ubiquitin mediated proteolysis
pswi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130209344 (syvn1)
04120 Ubiquitin mediated proteolysis
130209344 (syvn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130209344 (syvn1)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130209344 (syvn1)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130209344 (syvn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-ANAPC11
zf-RING-like
zf-HC5HC2H
zf-Nse
FANCL_C
Endonuclease_7
Motif
Other DBs
NCBI-GeneID:
130209344
NCBI-ProteinID:
XP_056294886
LinkDB
All DBs
Position
19:5137524..5145741
Genome browser
AA seq
627 aa
AA seq
DB search
MMRATLVTATSLALTGAVVAHAYLLKLQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFIKCFHWLA
EDRVDFMERSPNISWIFHFRVLSLMGLLAILDFLFVNHACHSIIIRGASVQLVFGFEYAI
LMTMVLTTFIKYLLHTIDLQSENPWDNKAVYMLYTELFTGFIKVLLYISFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQASDNVCIICREEMVT
GAKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDILRATNNNQTPAAAQAPPPAPAAPANAP
VAPPANMAQGMLPGFPPGVFPFWGPFPAVPPPAAAAAAPGAADAPQAAGTSQAASSTAGA
AAPGSAMPGFPFAYPPPPFPTAPWLMPPPPPFVSMPPPPPSLSRLSEEELRDMEAEGRRG
LEARLQCLQNIHTLLDAAMLNIHHYLSTVTTLALPRAEAGAAAASGTGGAASPPAAGSST
DGPSQEKDSSSSSSAEQADGAAAASPQPADSTSAASDTESKEELDEGAAGVGEDGEPNAA
ELRRRRLRKLETSPSSSSSSSSPPPDN
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgcgcaaccttggtgactgccaccagtctggctctgactggggccgtggtggcc
cacgcctacctcctcaaactccagttctaccccaccgtggtctacctcaccaagagcagc
cccagcatggcggtgttgtacattcaggcctttgtgttggtgttcctgctgggaaagttc
atgaggaaggtcttttttggacagctgagggctgcagaaatggagcatctcatcgagcgc
tcctggtacgctgtgaccgagacgtgcctggcgttcaccgtgttcagggacgacttctcc
cctcgctttgtcgccctcttcacactcctgctcttcatcaagtgcttccactggctggct
gaggaccgggtggactttatggaacgaagtccaaacatatcttggatttttcacttcaga
gtgttatctctcatgggactgctggctatcctggacttcctgtttgtcaaccacgcctgt
cacagcatcatcatccgaggagcctcggtgcagctcgtcttcgggtttgagtatgccatc
ctgatgaccatggtgctgacgaccttcatcaagtaccttctgcacaccatcgacctgcag
agtgagaatccctgggacaacaaggccgtctacatgctctatacagagctcttcacaggt
ttcattaaagtgctgctgtacatttccttcatgaccatcatgataaaggtccacaccttc
cccctgtttgccatccggcccatgtatctggccatgaggcagttcaagaaagccgtaacg
gatgctataatgtcccggagagccatccgcaacatgaatacactgtaccccgacgctact
cctgaagatctgcaggcctccgacaacgtctgtatcatctgtcgagaggaaatggtcacc
ggagccaagaaactgccttgtaatcacattttccactccagctgcctccgctcctggttc
cagcggcagcagacctgcccgacctgtcgcatggacatcctgcgcgcaactaacaacaat
cagaccccggccgcggctcaggcccctccccctgcccccgcagcccccgccaacgccccc
gtggccccgcccgccaacatggcccaaggcatgttacctggcttcccccccggagtcttc
cccttctggggtcccttccccgcggtgcctccccccgccgcagcggccgcggctccgggc
gccgccgatgcgccgcaggcggccggcaccagccaggccgcctcgtcgacggcaggcgct
gcagctccaggatcggcaatgccgggcttccccttcgcttacccccctccacccttcccc
accgcgccgtggctcatgcccccccctcctcccttcgtctccatgcctcctcctcctccc
tctctgtcccggctgtccgaggaagagctgagggatatggaggcggagggtcggcggggc
ctggaggcccggctccagtgtctccagaacatccacaccctgctggacgccgccatgctc
aacatccaccactacctcagcaccgtcaccacgctcgctcttcctcgggccgaggccggc
gccgcagccgccagcgggaccggcggcgccgcttcccctcctgcggcgggcagcagcacg
gacggccccagccaggagaaggactcctccagctcttcgagcgccgagcaggcggacggc
gccgcggcagcctccccgcagccggccgactccacttccgccgcctcggacacggagagt
aaagaagagctggacgagggcgcggcgggcgtcggggaggacggagagccgaacgccgcc
gagctgaggcgccgccgcctccgcaagctggagacgtcgccgtcgtcctcctcctcctcc
tcctcgccgcctcccgacaactga
DBGET
integrated database retrieval system
