Pseudoliparis swirei (Mariana hadal snailfish): 130209351
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Entry
130209351 CDS
T09868
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04010
MAPK signaling pathway
pswi04210
Apoptosis
pswi04218
Cellular senescence
pswi04620
Toll-like receptor signaling pathway
pswi04621
NOD-like receptor signaling pathway
pswi04622
RIG-I-like receptor signaling pathway
pswi04623
Cytosolic DNA-sensing pathway
pswi04625
C-type lectin receptor signaling pathway
pswi04920
Adipocytokine signaling pathway
pswi05132
Salmonella infection
pswi05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
130209351 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
130209351 (nfkb1)
04218 Cellular senescence
130209351 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
130209351 (nfkb1)
04621 NOD-like receptor signaling pathway
130209351 (nfkb1)
04622 RIG-I-like receptor signaling pathway
130209351 (nfkb1)
04623 Cytosolic DNA-sensing pathway
130209351 (nfkb1)
04625 C-type lectin receptor signaling pathway
130209351 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
130209351 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
130209351 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
130209351 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130209351 (nfkb1)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
130209351 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_5
Ank_4
Ank_3
Death
Motif
Other DBs
NCBI-GeneID:
130209351
NCBI-ProteinID:
XP_056294899
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All DBs
Position
19:complement(27855414..27889932)
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AA seq
948 aa
AA seq
DB search
MAGEDRYLHPSSQTSSQIFDNMGMDQVWDFTHFPVMSQNASLQTVDGPFLQIVEQPKQRG
FRFRYGCEGPSHGGLPGASSEKNSKTYPAVKISNYQGPARVVVQLVTALTPHPQLHAHSL
VGKQCDKGICVTDLQPKDSNISFPNLGILHVTKKNVSKTLEERMVEAVRLGHSGGVRIHP
DIDALQGEVRAPRDLTDHQRSVMSSAASLQAKEMDLSVARLMFTAFLPNSDGGFSRRLEP
VVSDPIYDSKAPNASNLKIVRMDRTAGCVSGGEEVYLLCDKVQKDDIQVRFFEEDNSGVT
WEAQGDFSPTDVHRQFAIVFKTPKYRDQNLQKPTAVFVQLKRKSDNETSDPKPFTYHPQI
IDKEEVQRKRQKTLPNFQDFSGHGGGGSLYRGGGGGGGGPAAGGGPGSAGEGGYFQGFTT
YNYGGAGGGGGGGFSTGYSAGLGGGGGGGGGGGLKHEEKKKAGDVTDDRHPDDDSGSGVA
LRAAARPGGLDVGGRSEEGGVSAEEPEGDLRLQAAGGRLEALFRYSVTGDSAYLLAAQRQ
LMAAQDEDGDTGLHLAVLHSQQEALKSLTQVVSALPGEEVLNMRNHLYQTPLHLAVITQQ
REAVEALLLAGADPTLTDRHGNTALHLASRLEGGGGGGGGIVQFLLQHREMSELLDHTNT
AGLCAIHLAVLANQLSSLRELLVGGANVEAQERGCGRTALHLATERDNVSLAGCLLLEGN
AQVDCFTFNGSTPLHIAAGRGSVKLTALLMAAGANPQKENFEPLFFREEDCDEEREDEDE
DEGYIPGTTPLNMAATTQVLELLNGKEYETKCPQKAFTPSQGDLAILDLEVKQQVCRALE
SEGCWENLAHSLGLGILNTAFRLSPSPAKTLLDSYEVSGGTVRDLLAGLRSVGECRGLSV
LEEALRRRHEDEDEEEEEEEEEEPSGESLARDPKADPRVDSGVELSTA
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggctggagaagaccgttaccttcatccgtccagccagacttcttctcagatcttcgac
aacatgggaatggatcaggtgtgggattttacacatttccccgtgatgtcccagaatgca
tcgctgcagacagtggacggaccattcctgcagatcgtggagcagcccaaacagcgaggc
ttcaggttcaggtacggctgtgaaggcccatcccacgggggcctgccaggagcctccagc
gagaagaacagcaagacctaccccgccgtcaagatcagtaactaccagggcccggcccgg
gtggtggtccagctggtgacggcgctgaccccccacccccagctgcacgcgcacagcctg
gtggggaagcagtgcgacaaagggatctgtgtcacggacctgcagcccaaagactccaac
atcagcttccctaacctcggcatcctccacgtgacgaagaagaacgtgtcgaagacgctg
gaggagcgcatggtggaggccgtgaggctgggccacagcgggggggtccgcatccacccc
gacatcgacgccctgcagggggaggtccgcgcgccccgggacctcaccgaccaccagcgc
agcgtgatgagcagcgccgcgtccctgcaggcgaaggagatggacctcagcgtggcccgc
ctcatgttcacggccttcctgcccaacagcgacggaggcttctccaggcggctggagccc
gtcgtgtccgaccccatctacgacagcaaagctcccaacgcctccaacctgaagatcgtg
aggatggatcgcaccgccggctgcgtgagcggaggagaggaggtctacctgctgtgtgac
aaggtccagaaagatgacatccaggttcggttctttgaagaagacaactcgggggtcacc
tgggaggctcagggagatttctcccctacagacgtccacagacagttcgccatcgtgttc
aagactccgaagtatcgagaccagaacctccagaagccgacggcggtgttcgtccagctg
aagaggaagtccgacaacgagaccagcgaccccaagcccttcacctaccaccctcagatc
atagacaaggaggaggtgcagaggaagagacagaagacgttgccaaacttccaggacttc
agcggccacggaggaggtggaagtctgtaccgaggaggaggaggaggaggaggaggtcct
gctgcaggtggaggacctggatctgcaggagaaggaggttacttccagggcttcactacc
tacaactatggcggagcaggaggaggaggaggaggaggtttctccacaggatactcagct
ggtctgggaggaggaggaggaggaggaggaggaggaggcctcaaacacgaggaaaagaaa
aaagcgggcgacgtgacagacgaccgccacccagacgatgactcggggtcgggggtcgcg
ctgagagctgccgcccggccaggaggcctggatgtgggggggaggagtgaggagggaggg
gtcagtgcggaggagcctgaaggcgacctccggctgcaggcggccggcggccggctcgag
gctctgtttcggtattcggtgaccggcgactcggcctatctgctggcggcgcaacggcag
ctgatggcggcgcaggacgaggacggagacacgggcctccacctggcagtcctccacagc
cagcaggaggcgctgaagagtctgacgcaggtggtctccgctctgcccggagaggaggtg
ctcaacatgagaaaccacctctaccagactcctttgcacctggccgtgatcacccagcag
agggaggcggtggaagcgctgctattggccggcgccgacccgactctgacggaccgccac
ggcaacacggcgctccacctggcgtcccggctggaaggaggaggaggaggaggaggaggg
atagtccagtttctactgcagcacagagagatgagtgagctgctggaccacaccaacaca
gcaggtctgtgtgcgatccacctggccgtcctggccaatcagctgtcttctctcagggag
ctgctggtgggcggggctaacgtggaggctcaggagcgcggctgtggacgcaccgcgctc
cacctcgccaccgagagggacaacgtgtcgctggccggctgcctgctgctggagggaaac
gctcaggtggactgcttcaccttcaacggctccacccccctccacatcgccgcaggccga
ggctccgtcaagctgacggctctcctgatggctgcaggagcgaaccctcagaaggagaac
tttgagccactcttcttcagggaggaggactgtgatgaagagagggaggatgaggatgaa
gatgaaggctacatcccaggaaccactcctctcaacatggccgccaccactcaggtgttg
gagcttctgaatggaaaagaatatgaaacaaaatgtccacaaaaagccttcaccccttct
caaggcgacttggcgatcctggacctggaggtgaagcagcaggtgtgtcgcgctctggag
agtgaaggatgctgggaaaacctggctcacagtctgggcctcgggatcctcaacacggcc
ttcaggctgagcccctcccccgccaagacactgctggacagctacgaggtttcaggcggg
acggtcagggacctgctggctggtctcaggtcagtcggcgagtgcagagggctgagcgtc
ctggaggaggcgctgcgtcgccgccatgaggatgaggatgaggaggaggaggaggaggag
gaggaggagccgagcggcgagtctctggctcgggatccgaaggcggaccctcgggtggac
agcggcgtggagctctcaacggcgtga
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