Pseudoliparis swirei (Mariana hadal snailfish): 130209391
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Entry
130209391 CDS
T09868
Symbol
gria1a
Name
(RefSeq) LOW QUALITY PROTEIN: glutamate receptor 1a
KO
K05197
glutamate receptor 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04080
Neuroactive ligand-receptor interaction
pswi04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
130209391 (gria1a)
04082 Neuroactive ligand signaling
130209391 (gria1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pswi04040
]
130209391 (gria1a)
Ion channels [BR:
pswi04040
]
Ligand-gated channels
Glutamate (ionotropic)
130209391 (gria1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ANF_receptor
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
130209391
NCBI-ProteinID:
XP_056294977
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All DBs
Position
19:2434326..2509685
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AA seq
1023 aa
AA seq
DB search
MQRSLSILCTSLLGVCLGSSSSFPSNINIGGLFPTESHEYEVFRFALSHHQDIPKLVPQV
DMVKMGNSFSMTYAFCSQFSKGVYAIIGLYDRKTVNMLMSFCGALHVCFVTPSFPIETAN
QFVIQLRPEVQDALVGVIEHYGWNKFVYMYSSDSGLSVLQKVLDTAAERNWLVTSVNVET
MTEASFLKVFQDLDKRKEGQIIIDCETERLTGILRKIVEQGKNAKSYHYILANLGFLDID
LTDLRKGGANITGFQLVNQSEPSVGRVVHQWMDFDNKDSKVPKTGLKYTGALTYDGVKVM
FTAFQNLRKQRIDISRRGNAGECLANPPAPWGQGIDIQRALQQVRIDGLTGHIQFNEKGH
RTNFTVSVMELAPSGPKKVGYWNEDEKYVTTASFVRGSNETYGLQNRTYIVTTILESPYV
MLKKNHEQLAGNDKYEGYIVELAAEIGKHVSYQYKLKVVSDGKYGARDPESKMWNGMVGE
LVYGKADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPTKSKPGVFSFLDPLAYEIW
MCIVFAYIGVSVVLFLVSRFSPYEWHAEDYEEGGGEPQSPAQGASNGVQQGPTQQNLNQQ
NAEQTNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAF
LTVERMVSPIESAEDLAKQTEIAYGTLDAGSTKEFFRRSKIAVFEKMWSYMKAADPFVFV
KTTDEGVMRVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSPLR
NPVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILIGGL
GLAMLVALVEFCYKSRTESRRMKQSINDAMRCSTLTRMSGNGAAERTGESSPTTXPKTVQ
TLPCMSHAASMGLGASGCDRRHVTVLAAGKQAGRGRRRAPMKTLNDLMAVWFWPSSSTPH
PPPHPPDWLSTRPTWNKTFKKTKNYCQNALSEKEEKNAHVRTNERTKRLTSVFLGFFFKY
VDV
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcagcctcagcatcctgtgcaccagcctcctgggggtgtgcttgggctcgagc
tcaagtttcccaagtaacatcaatataggaggcttgttcccgaccgaatcgcacgagtat
gaggtgttccgcttcgccctctcgcaccaccaggacatccccaaactggtgccgcaggtg
gatatggtcaagatggggaacagcttctccatgacatacgccttctgctcccagttctcc
aaaggcgtgtacgccatcatcggcctgtacgaccggaagacggtgaacatgctgatgtcc
ttctgcggcgcgctgcacgtctgcttcgtcacgccgtccttccccatcgagacggccaac
cagttcgtcatccagctgcggcccgaggtccaggacgccctggtgggcgtgatcgagcac
tacggctggaacaagttcgtctacatgtacagctccgactcaggcctgtcggtgctgcag
aaggtgctggacacggcggcggagaggaactggctggtgacgtcggtcaacgtggagacc
atgacggaggcctccttcctgaaggtgttccaggacctggacaagaggaaggagggccag
atcatcatcgactgtgagaccgagaggctcaccggcatcctcaggaagattgttgaacaa
ggcaagaatgcaaagagctaccactacatcctggctaatctgggcttcctggacatcgac
ctgacagacctgaggaagggcggagccaacatcaccggcttccagctggtcaaccaatcg
gagccgtccgtcggccgcgtcgtccaccaatggatggacttcgacaacaaggactccaaa
gtgcccaagactggactcaagtacaccggcgctctgacgtacgacggggtgaaagtcatg
ttcacggccttccagaacttaaggaagcagaggatcgacatctctcgccgcggcaacgcc
ggcgagtgtctggccaacccgccggcgccctgggggcagggcatcgacatccagagggcc
ctgcagcaggtccggatcgacgggttgacgggtcacatccagttcaacgagaaaggtcac
cggaccaacttcacggtcagcgtcatggagctcgccccctctggacccaagaaggtcggc
tactggaacgaagacgagaagtatgtgacgaccgccagcttcgtgagaggcagcaacgag
acatacggtctgcagaacaggacgtacatagtcaccaccatcctggagtctccgtacgtg
atgctgaagaagaaccacgagcagctggcgggaaacgacaagtacgagggctacatcgtg
gagctcgccgccgagatcggcaaacacgtgagctaccagtacaagctgaaggtcgtctcg
gacgggaagtacggagcccgggacccggagagcaagatgtggaacggcatggtgggagag
ctggtgtacgggaaagccgacgtggccgtggctcctctgaccatcaccctcgtccgcgag
gaggtgatcgacttctcgaagcccttcatgtcgctgggcatctccatcatgatcaagaag
cccaccaagtccaagcccggcgtgttctccttcctcgacccgctggcctacgagatctgg
atgtgcatcgtgttcgcctacatcggcgtcagcgtggtgctgttcctcgtcagccgcttc
agcccctacgagtggcacgccgaggactacgaggagggcggcggcgagccgcagagcccc
gcccagggggcctccaacggcgtgcagcagggcccgacgcagcagaacctcaaccagcag
aacgccgagcagaccaacgagttcggcatcttcaactcgctgtggttctccctgggcgcc
ttcatgcagcagggctgcgacatctcgccgcgctcgctgtccggccgcatcgtgggagga
gtctggtggttcttcaccctcatcatcatctcgtcctacaccgccaacctggccgccttc
ctgaccgtggagaggatggtgtctccgatcgagagcgccgaggacctggccaagcagacg
gagatcgcctacgggacgctggacgccggctccaccaaagagttcttcaggaggtcgaag
atcgccgtgttcgagaagatgtggtcctacatgaaggcggcggaccccttcgtgttcgtg
aagaccacggacgagggcgtgatgagggtccgcaagtccaagggcaagtacgcctacctg
ctggagtccaccatgaacgagtacatcgagcagaggaaaccctgcgacaccatgaaggtg
ggcgggaacctggactctaaaggttacggcatcgccacgcccaagggctcccccctcaga
aacccagtaaacctggcagtgttaaaactgaacgagcagggcctactggacaaattgaaa
aacaagtggtggtacgacaagggagagtgcggcagcgggggcggggactccaaggacaag
acgagcgccctgagcctcagcaacgtggcgggcgtgttctacatcctgatcggcggcctg
ggcctcgccatgctggtggcgctggtggagttctgctacaagtcccggaccgagtcgcgc
cgaatgaagcaatccatcaacgacgccatgcgctgctccaccctgaccaggatgagcggc
aacggagcggcggagagaacgggcgaatcctcgcccacgactntccccaagaccgtccag
acgctgccctgcatgagccacgccgccagcatgggactgggagcctccggctgtgaccgg
cgtcacgtgactgtgctggcggcggggaaacaggcagggcggggccgaagaagagcaccg
atgaagactcttaatgacctcatggccgtctggttttggccttcatcctccaccccccac
cccccaccccaccctcccgactggctgtcgacgcgcccgacttggaacaagacttttaaa
aaaacaaaaaactactgccaaaacgcactctcggaaaaagaagaaaaaaacgctcacgta
cgaacgaacgaacgtacgaagagactcacttcggtttttttgggttttttttttaaatac
gtggatgtttga
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