Pseudoliparis swirei (Mariana hadal snailfish): 130209399
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Entry
130209399 CDS
T09868
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19 isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03040
Spliceosome
pswi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130209399 (prpf19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130209399 (prpf19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pswi03041
]
130209399 (prpf19)
04121 Ubiquitin system [BR:
pswi04121
]
130209399 (prpf19)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130209399 (prpf19)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130209399 (prpf19)
Spliceosome [BR:
pswi03041
]
Complex B
Other components
Prp19 complex
130209399 (prpf19)
Complex C
Prp19-CDC5 complex
130209399 (prpf19)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
U-box type E3
130209399 (prpf19)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
130209399 (prpf19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Prp19
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
PEP5_VPS11_N
WDR90_beta-prop_4th
Beta-prop_HPS5
U-box
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_Nup120_160
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_WDR35_TULP_N
PROPPIN
Beta-prop_DCAF12
B-prop_COPA_B_2nd
Ge1_WD40
Cytochrom_D1
zf-Nse
DUF2518
ATG16
Motif
Other DBs
NCBI-GeneID:
130209399
NCBI-ProteinID:
XP_056294995
LinkDB
All DBs
Position
19:13785024..13791297
Genome browser
AA seq
505 aa
AA seq
DB search
MSLVCSISNEVPEHPCVSPVSSQVFERRLIEKYIAENGTDPMNGQPLSEEQLVDIKVSHP
IRPKAPSATSIPAILKSLQDEWDAVMLHSFNLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQALPTSQPAAVGSGGEPMEISEQVGMTSEIIQKLQDK
ATILTTERKKRGKTVPEELVRSEDLGKYRQVASHAGLHSASVPGILALDLCPSDTNKVLT
GGADKNVVVFDKSEEQIVATLKGHTKKVTSVIYHPSQSVVFSASPDSTIRVWSVAGGNCV
QVVRAHEAGVTGLSLHATGDYLLSSSEDQSWAFSDIETGRVLTKVTDESASCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSLKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFTNHSGLVT
GVAFGENAQFLTSAGMDRSLKFYSL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctggtttgttcaatctccaacgaggtgccggagcacccgtgcgtgtccccggtg
tccagccaggtgttcgagcggaggctgatcgaaaagtacatcgctgagaatgggaccgac
ccgatgaacggacagccgctgtctgaggagcagctcgtagatatcaaagtgtcccatcct
attagaccaaaggctccatcagcaacaagcattcctgccattctcaagtcactccaagat
gaatgggacgctgttatgcttcacagcttcaacctgcggcaacagctgcagactactcgc
caagaactgtcccacgcgctttaccaacatgatgctgcctgcagagtcatcgctcgactc
accaaagaggtcactgctgccagagaagctcttgccacactcaaaccccaggctggattg
gttgcccctcaggcactccccacctcccagccagctgcagttggttctggcggagagccc
atggagattagtgaacaggtgggaatgacctcggagatcatccaaaagcttcaagacaaa
gctactatcctcaccacagaaagaaagaagagaggaaaaactgtcccagaggagctcgtt
agatctgaggatcttggcaaataccgccaagtggcctctcatgctggtcttcatagtgcc
agtgtccctggtattctggctctggatctgtgtccctcagacaccaacaaagttctcacc
ggtggagctgataagaacgtggtggtgtttgacaagagtgaagaacagattgtcgcaaca
cttaagggtcacaccaagaaggtcacctctgtcatttaccatccatctcagtctgtggtt
ttctctgcatctccagacagcaccatccgcgtgtggtctgtcgccgggggaaactgtgtc
caggtggtgcgtgcccacgaggcaggtgtcaccgggctctccctacatgctactggagac
tacctgctcagctcctctgaggatcagtcctgggccttttctgatatcgagactggtcga
gtcctcaccaaagttactgatgaaagtgctagctgtgctctcacctgtgctcagtttcac
cctgatggtctcatttttggcactgggacagctgattcccaaatcaagatctgggatctg
aaagagcgcactaacgtggccaacttcccaggccactctggccctgtcacctccattgct
ttctctgagaatggatattatctggctacaggtgcccaggatagctccctgaaactgtgg
gatctgaggaaactgaagaacttcaagaccatcactctggacaacaactatgaggtaaag
tccctcgtgtttgaccagagcggaacctacctggctgttggagggtctgacatccgtgtc
tacatctgcaaacagtggtccgaggtcctcaacttcacaaaccattcaggattggtgact
ggagtggcctttggagagaacgctcagttcctgacctcggcaggaatggatagaagtctc
aaattttacagtttgtag
DBGET
integrated database retrieval system
