Pseudoliparis swirei (Mariana hadal snailfish): 130209416
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Entry
130209416 CDS
T09868
Symbol
sec24b
Name
(RefSeq) protein transport protein Sec24B isoform X1
KO
K14007
protein transport protein SEC24
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130209416 (sec24b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130209416 (sec24b)
Membrane trafficking [BR:
pswi04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
130209416 (sec24b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_helical
Sec23_BS
zf-Sec23_Sec24
Gelsolin
Motif
Other DBs
NCBI-GeneID:
130209416
NCBI-ProteinID:
XP_056295029
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All DBs
Position
19:complement(26326599..26349426)
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AA seq
1187 aa
AA seq
DB search
MSAPGFTNLNSSIGYGQNPATPHRNGPAQTYQPMHPPTGCYGAPPQQQSYPTTPAHPDPA
PSKAPNTNSAHSADYYHGNHHQQHQQQHQLSQHHVAPSPYSAPPSQTYAALPSSAPSPSP
SPSNAHYSQQPLQQQPPYAPPGSYYGPQSYHAPPAQRSQQQPGLVPAPAVGPGAPVYPIV
SYPSAPGSSQFGTLSSSQSATPHGATPTQMGAPLHQYGASAAVHPGYGVAPPGQLEPTVN
GQGGAGHQHYDQSHPAPLSYDSCGGVVHGDADHPPSGTPSVHSSPGHRQGMQYGYVANSG
ASSASAAASGPAAAPSSSSSEDDDDEEDEEAGGDSSSSSTGSASPPPSSYDNLEGGSYPD
SMPPSNHMTNQAAPYGSYGYPGMPPANHQGPASVTDSSPSRDPYGQPSYQQYSQPFPNMS
QLSAALGGLSGVPELEVAALRPVNLLQERSLLPPRPLEAPEPNLSPDLRKVNCCPQSFRC
TLTSIPQTQALLTKARLPLGLLLHPFRDLQQLPVITSNTIVRCRSCRTYINPFVTFLDQR
RWKCNLCYRVNDVPDEFMYNPVTRSYGEPQKRPEVQNATVEFIASSDYMLRPPQPAAYLF
VLDVSHNAVEAGYLKYFCESLMDNLDKLPGDTRTRVGFLTFDNTIHFYNLQEGLSQPQML
VVSDIDDIFIPSHDSLMVNLKESKALVKDLLTSLPGMFSESRETHSALGPALQAAFKLMS
PTGGRVTVFQTQLPTIGAGALQSREDPNQRSSTKGVQHLGPATDFYKKLALDCSGQQIGV
DLFLLSSQYTDLASLSCISKYSAGSIFYYPSFHYAHNPTQLEKFQKDLERYLTRKIGFEA
VMRIRCTKGLSIHTFHGNFFVRSTDLLSLANVNPDSAFAVQMSIDDSLADSSLACFQAAL
LYTSSKGKRRIRVHTLCLPVVNQLSDVYAGADVQAITCLLADMAIDRSVTSSLSDARDAL
TNAAVDLMSAYKSNVSNLQQQSGLVVAASLRLFPVYILALLKQKALRTGTSTRLDERVFA
MCEFKTQPLQQLMRMVHPDLYRLDDMSDQGALHLNDTVVPQPHLLHLSAERVTRDGAFLL
DCGNVFYLWIGKSCDHLFIQDVLGCGDYASIPNDMSHIPELETLPSERVRAFLDWLQDKR
AFSATLHVMKDNSPSKATFFQYLVEDRTEGPYSYNEFLHHIQQQMSS
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgccgggattcacgaacctcaacagctccatcggctacggacagaacccggcg
accccccaccggaacggtccagcacagacctaccaacccatgcatccacccacaggctgc
tatggagctccacctcaacaacagagctaccccaccacccctgcccacccggatcctgct
cccagcaaagcacccaacacgaacagcgcccacagtgctgactactaccacggcaaccat
caccagcagcaccagcagcagcaccagctctcccagcaccatgtagcaccctccccatac
tctgctcctccttcacagacgtatgccgccctcccttcttcagcaccatcaccatcacca
tcaccatcaaatgcccactacagccaacagccattgcagcagcagccgccgtacgctccc
ccgggatcctactacgggccgcagtcgtaccacgctcccccggcacagcgttcccaacag
cagcccggtctggtgcccgcgccggccgtcggccccggggcgcccgtctacccgatcgtt
tcctacccgtctgcgccagggagtagccagtttggcacgctgagctcctcccagagcgcc
acgccgcacggagccacgcccacccagatgggggcccccttacatcagtacggcgcctca
gcagcagtgcatcctgggtacggcgtggcgccgccgggtcagctggagccgaccgtcaac
ggtcaaggaggcgcgggccaccaacactacgaccaaagccacccggcgcctctgagctac
gactcctgcggcggggtcgtccacggcgacgcggaccacccgccctcgggaaccccttcg
gtccattcctcaccgggccatcgccaaggcatgcagtatggatatgttgccaatagtgga
gctagctctgcctctgccgccgcctcaggcccggccgccgccccctcgtcatccagctct
gaggatgatgatgatgaggaggatgaggaagcaggtggagactcctcctcctccagcacc
ggcagcgcctccccgccgcccagcagctacgacaacctggagggcggcagctacccagat
tccatgccgccgtccaaccacatgaccaaccaggccgcgccctacggtagctatggttac
cccggtatgccgccggccaaccaccagggaccggcctccgtcacagactcctccccctct
cgtgacccatacggccagccaagctaccagcagtactcccagccgttccccaacatgtcc
cagctgtccgcggccctggggggcctgagcggcgtcccggagctggaggtggcggccttg
aggccggtgaacctgctccaggagaggagcctgctgcccccccggcccctcgaggccccc
gagcccaacctcagccccgacctccggaaggtcaactgttgccctcagtccttcaggtgt
accctgaccagcattcctcagacccaggctctactcaccaaggccagactccctctgggc
ctcctcctccaccccttcagagacctacagcagttaccggtgatcacgtcgaacaccatc
gtgcgctgtcgctcctgtcgcacctacatcaacccgtttgtcaccttcctggaccagcgc
cggtggaagtgcaacctctgttaccgggtcaacgacgttccggatgagttcatgtacaat
ccggtcacccggtcgtacggcgagccccaaaagaggcccgaggtccaaaacgccaccgtg
gagttcatcgcctcctcggactacatgttgcggccccctcagcctgcggcctacctgttt
gttctggacgtgtctcacaatgccgtggaggcgggttacctaaagtacttctgtgaatca
cttatggacaacctggacaagttgccgggcgacacccgcaccagggtgggcttcctcacc
ttcgacaacaccatccacttctacaacctgcaggaggggctgtcgcagccgcagatgctg
gtggtgtcggacatagacgacatcttcatcccgtctcacgacagtctgatggtgaacctg
aaggaaagcaaagcgctggtgaaggacctgctgacgtctctgccgggcatgttcagcgag
agcagggagacccacagcgccttgggcccggcgctgcaggccgccttcaagctcatgtcg
cccaccggggggcgcgtcaccgtattccagacgcagctgccgaccatcggggccggagcg
ctgcagtcgagggaagaccccaaccagcgctccagcaccaagggggtgcagcacctcggc
cccgccacagacttctacaagaagctggccctggactgctcggggcagcagatcggggtg
gacctgttcctgctcagctcccagtacacggacctggcttcactgtcatgcatctccaag
tactcggccggcagcatcttctactacccctccttccactacgcccacaaccccactcaa
ctggagaagttccagaaggatctggagcgctacctcacccggaagatcggcttcgaggcc
gtcatgaggatacgctgcactaaaggtttatccatccacacgttccacggtaacttcttc
gtgcgctccaccgacctgctgtccctggccaacgtgaaccccgactccgccttcgccgtc
cagatgtccatcgacgactctctggcggactcgtctctggcctgcttccaggccgcgctg
ctctacacctccagtaaaggaaaacgacggatccgggtccacaccttgtgtctgccggtg
gtcaaccagctgagcgacgtgtacgccggcgccgacgttcaggccatcacgtgtctgctc
gccgacatggccatcgaccgctccgtcacgtccagcctgtcggacgctcgcgacgccctg
accaacgcggcggtggacctgatgagcgcctacaagagcaacgtgtccaacctgcagcag
cagtccggcctcgtggtcgccgcctccttgcgcctcttccccgtctacatcctcgcgctg
ctcaaacagaaagccttgcggacgggcaccagcacgcggctggacgagcgcgtcttcgcc
atgtgcgagttcaagacgcagccgctgcagcagctgatgcggatggtccaccccgacctg
taccggctggacgacatgtcggaccagggggcgctgcatctgaacgacaccgtggttccc
cagcctcacctgctccacctgtcggctgagcgggtgaccagggacggagcgttcctcctg
gactgcggcaacgtgttttacctgtggatcggcaaatcctgcgaccacttgttcatccag
gacgtcctgggctgcggcgactacgcctccatccccaacgacatgagtcacattcccgag
ctggagacgctcccgtccgagagggtgcgagcgttcctcgactggctgcaggacaaacgg
gcgttcagcgccacgctgcacgtcatgaaggacaactctccgtccaaagctacgttcttc
cagtacctggtggaggaccggaccgaggggccttattcctacaatgagttcctgcatcac
atccagcagcagatgtcctcgtag
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