Pseudoliparis swirei (Mariana hadal snailfish): 130209458
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Entry
130209458 CDS
T09868
Symbol
afg2a
Name
(RefSeq) ribosome biogenesis protein SPATA5
KO
K14575
AAA family ATPase
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
130209458 (afg2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pswi03009
]
130209458 (afg2a)
Ribosome biogenesis [BR:
pswi03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
130209458 (afg2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
TIP49
AAA_16
AAA_5
AAA_22
AAA_2
AAA_28
AAA_33
Mg_chelatase
NPHP3_N
AAA_7
RNA_helicase
AAA_14
nSTAND3
Parvo_NS1
Rad17
IstB_IS21
AAA_18
AAA_3
TsaE
ATPase
CDC48_2
DUF5906
SLFN-g3_helicase
CDC48_N
Motif
Other DBs
NCBI-GeneID:
130209458
NCBI-ProteinID:
XP_056295103
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Position
19:25622076..25709043
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AA seq
886 aa
AA seq
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MSSKKNKSKANRASEGDSSLLSKETSSDSSNLQTPGREGGRRASLHSNSFTVIDFIDKAD
DKTPKSCRSTLVQLSLNSMKSAGVCIGRPVLLTSPTGRQEVCSGWPVASFPAGKVGLQKC
AQNNLRARSGEEVTLHPLTGPVLRAEEVVLFNRTKDDTLETDEFKSFFLRSLDGNVLLPG
NVVSLSYFGRSCTLRVETITGEDGVTVHRAAPEPEDSSSSVLLDSPSADLSLQLSLLTVD
DDGTAAAGSPSSGEPGPAASTPRRAPVSSPLAPRTPPPRSPPAEDAVSPERAEKKLPAAP
PGGALSTDTFYRLSCATKVRVGRGAGREDPADAQDSRSKVTFSMIGGLSSQLDAIRETIE
LPLKHPELFSTYGIQPPRGVLLYGPPGTGKTMIGRAIANEVGVHMTVINGPEIMSKFYGE
TEARLRQIFAEASQKRPAIIFIDELDALCPKRDGAQNEVEKRVVASLLTLMDGIGSEGHS
GQLLVLGATNRPHAIDPALRRPGRFDKELEVGVPNAAERADILRKQLRFVPCGAAAEEVT
QLAAAAHGYVGADLAAVCKEAGMRALRRALAASSPPPSDEQLTGTVTVTLQDLQWAMTVV
KPSAMREVAIDVPKVRWSDVGGMEEVKLKLKQAVEWPLKHPEAFTRMGIQPPKGVLLYGP
PGCSKTMIAKALANESGLNFLAVKGPELLSKYVGESERAVREVFRKARAVAPSIIFFDEI
DALAGERGSSSGSAGGVGDRVLAQLLTEMDGIEQLRDVTVLAATNRPDMIDKALMRPGRL
DRIVYVPLPDAPTRREIFAIQFRDMPVAPDVSLEELVTRTDKYSGAEITAVCREAGLLAL
QDDIAARIIQARHFEAALHAVTPRIPDALIQSYLSFQQRQSGLCSF
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcaaagaaaaacaaaagcaaagctaacagagcgagtgaaggagacagttcgctg
ctgtcgaaggagacctcgagcgactcctccaacctgcagacacctgggcgcgagggagga
aggcgcgcgagtctacacagcaactccttcactgtcatcgatttcattgataaagccgac
gacaaaacgcccaaaagttgcagatcgactttagtccagctgagcctcaactcgatgaag
tccgccggcgtctgcatcgggaggccggtcctgctcacgagtcccacgggcagacaagag
gtgtgctcgggttggcccgtcgcctcctttcctgcaggaaaagtgggtcttcagaaatgt
gcccagaacaacctgagagcgaggtccggggaggaggtgacgctgcaccccctgacgggt
cccgtgctccgggccgaggaggtggttctcttcaacaggactaaagatgacacgctggag
acggacgagttcaagagcttcttcctgcgctctttggatgggaacgtccttctcccagga
aacgtcgtctcgctgtcgtacttcggccgctcgtgcactctgcgcgtcgagaccataacg
ggcgaggacggcgtcaccgtccaccgagcggctccggagccggaggactcctcctcctcc
gttctgctggactccccctcggccgacctctccctgcagctcagcctgctcaccgtggac
gacgacggcaccgccgccgccgggtcaccctcgtccggggagccgggcccggcggccagc
accccacgccgcgcccccgtctcctcgcccctcgctccccgcacgccgcccccccggagt
cctcccgccgaggacgccgtcagtccggagcgggcggagaaaaaactccccgcggcgccc
cctggtggcgcgctgagcaccgacaccttctaccgcctgtcctgcgccaccaaagtccga
gtcggacgcggggcggggcgggaggatccggcggacgcgcaggactcgaggtcaaaggtc
actttcagcatgatcggagggctcagcagccagctggatgccatcagagagaccattgag
cttccgctgaagcaccccgagctgttctccacctacgggatccagccgccccgcggggtg
cttctgtacgggccccccggcaccgggaagaccatgattggtcgagccatagccaatgag
gtcggcgttcacatgacggtgatcaacgggccggagatcatgagcaaattctacggtgaa
acggaggcgaggctgaggcagatattcgccgaggcgtctcagaaacggccggcgataatc
ttcatcgacgagctggacgctctgtgcccgaagcgagacggggcgcagaacgaggtggag
aagcgcgtcgtcgcttctctcctgactctgatggacggcatcggctcggagggccactcg
ggtcagctgttggttttgggggccacaaaccggccccacgccatcgaccccgccctgcgc
cgaccggggcgcttcgacaaggagctggaggtcggcgttccgaacgccgcggagcgggcc
gacatcctgaggaagcagctgagattcgtgccgtgcggcgccgccgccgaggaggtgacg
cagctggccgccgccgctcacggctacgtgggagccgacctcgccgccgtctgcaaagag
gcaggtatgcgtgccctgaggcgagcgctggccgcttcctccccgccgccgtcggacgag
cagctgaccggcacggtgaccgtcaccctgcaggacctccagtgggccatgacggtggtg
aagccgagcgccatgagggaggtcgccatcgacgtgcccaaggtccgctggtcggacgtc
ggcgggatggaggaggtgaagctgaaactgaagcaggccgtggagtggcccctgaagcac
cccgaggccttcacccgcatgggcatccagccccctaaaggggtcctgctgtacgggccc
ccgggctgctcaaagaccatgatcgccaaggccctggccaacgagagcgggctcaacttc
ctggccgtcaaaggtccagagttgctgagcaagtacgtcggcgagtcggagcgagccgtg
agagaggtgtttcggaaggcgagggccgtcgctccctccatcatcttcttcgacgagatc
gacgccctcgccggcgaaagaggaagctcctcgggctccgccggcggcgtcggcgaccgc
gtcctggctcagctcctgacggagatggacggcatcgagcagctccgggacgtcaccgtg
ctggccgccaccaaccggcccgacatgatcgataaggctctgatgcgtccgggtcgcctc
gaccgcatcgtctacgttcctctccccgacgctccgacccggcgggagatatttgcgatc
cagttccgcgacatgccggtggccccggacgtgtccctggaggagctggtgacccgcacc
gacaagtactccggagcagagatcacggcggtgtgccgggaggccggcctgctcgccctg
caggacgacatcgccgcgcggatcatccaggcgcgacactttgaggccgcgctgcacgcc
gtgacgcctcggatccccgacgcgctcatccagtcatacctcagctttcagcagcggcag
agcggcctgtgctccttctga
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