Pseudoliparis swirei (Mariana hadal snailfish): 130209497
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Entry
130209497 CDS
T09868
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04136
Autophagy - other
pswi04140
Autophagy - animal
pswi04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130209497 (atg16l1)
04136 Autophagy - other
130209497 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
130209497 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130209497 (atg16l1)
03029 Mitochondrial biogenesis [BR:
pswi03029
]
130209497 (atg16l1)
Membrane trafficking [BR:
pswi04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
130209497 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
130209497 (atg16l1)
Mitochondrial biogenesis [BR:
pswi03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
130209497 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
ATG16
Beta-prop_IFT122_1st
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WDR55
EIF3I
WD40_Gbeta
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
DSE1_N
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_VPS8
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_NOL10_N
eIF2A
CFAP251_N
Tricorn_2nd
Beta-prop_IFT140_1st
Beta-prop_ACSF4
Beta-prop_SPT8
Beta-prop_DCAF12
Nucleo_P87
AP5B1_middle
PhoU
Motif
Other DBs
NCBI-GeneID:
130209497
NCBI-ProteinID:
XP_056295170
LinkDB
All DBs
Position
19:complement(28386652..28405372)
Genome browser
AA seq
638 aa
AA seq
DB search
MSVEKRRTRSTAVMAERRLQCSWKRHVSEQLKIRDRVQRHAFEEIVLQYNRLLEKSDLQT
VLSERYQTDKYEVQRGHESSSGTDGGRSAVLQQETSQMRIKHQEELTELHKKRGELAQNV
IDLNNQIQQKDKEIQSNTARMVVYQQQTSSLEGEGRELRSLLQDLERANQTLKDEYDALQ
ITFSALEEKLRKTTEDNQELVSRWMAEKAQEANKLNAENEKDSRRRQAKLQKELADAAKE
PLPVEPSVLLRLLHRPPSGPADCVVFRDDDIEVLAEDAKAAGETSPKRPLGRTPSHVSQP
PGGLLDSISNSIFRRRRAPNALSSSPENPEPPSGPCAEVRVPTTALHVFEAHDGEVNAVR
FSPGSRLLATGGMDRRVKLWEVVAGRCEPKGALTGSNAGITSIEFDSAGSYLLAASNDFA
SRIWTVEDSRLRHTLTGHSGKVLAARFLLDNARIVSGSYDRTLKLWDLRSKVCMKTVFAG
SSCNDIVCTEQCVMSGHFDKKVRFWDIRAESIVQELELLGRVTSLDLNHDRTELLTCSRD
DLVKIIDLRTCSVKQTLSAQGFKCGADWTRVTFSPDGRYVAGGSADGALYIWNVLTGEVD
RTLDRKHNSAINSVSWSPSGAFVASVEKGSRAILWSDM
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttgagaaaaggagaacccggagcaccgcggtgatggcggagcggcggctgcag
tgttcatggaagagacacgtctcagagcagctgaagatcagagaccgagtccagagacac
gccttcgaggagatcgtcctccagtataaccggctgctggagaagtccgacctgcagacg
gttctgtcggaacgataccagacagacaagtatgaggtccagagaggacacgagtccagc
tcggggacagacggcggccgcagtgccgtcctgcagcaggagacgtctcagatgagaatc
aaacaccaggaggagctgacggagctgcacaagaaacgaggagagctcgcgcagaacgtc
atcgacctgaacaaccagattcaacagaaggacaaggagatccagagcaacacggccagg
atggtggtgtaccagcagcagacctccagcctggagggagagggtcgtgagctgaggagc
ctcctgcaggacctggagagggccaaccagaccctaaaggacgagtacgacgccctgcag
atcaccttctctgctctggaggagaagctgaggaagaccaccgaagacaaccaggagctg
gtgtcccgctggatggccgagaaggctcaggaggccaacaagctgaacgccgagaacgag
aaggacagcaggcggagacaagccaagctgcagaaggagctggccgacgcagccaaggag
ccgctccccgtcgagccgtcagtactcctccgtctgcttcacaggccgccgtcgggcccc
gctgactgtgttgtcttcagggacgacgacatcgaggttctggcagaggacgccaaggcg
gccggagagacctccccgaagaggccgctcggcagaacccccagtcacgtctcccagcct
cctggtggtctgctggactccatctccaactccatatttcgcaggcgccgagcccccaat
gcgctcagctcttcaccggagaacccagaacctccgtctggaccgtgtgccgaggtccgg
gtccccaccacggcactgcacgtgtttgaagcacacgacggcgaggtcaacgcggtgagg
ttcagccctggatctcgtctcctagcaacaggagggatggaccgcagggtgaagctgtgg
gaggtggttgcaggtcgctgtgagcctaaaggcgctctgaccggcagcaacgccggaatc
accagcatcgagttcgacagcgcgggctcctacctgctggccgcctccaacgacttcgcc
agccgcatctggaccgtggaggactcgcggctgaggcacaccttgacgggccacagcggg
aaggtgctggccgctcgcttcctgttggacaacgctcgcatcgtctccgggagctacgac
cggaccctgaagctgtgggacctgcgcagcaaagtctgcatgaagacggtgttcgccggg
tccagctgcaacgacatcgtgtgcacggagcagtgcgtcatgagcggccacttcgacaag
aaggtccgcttctgggacatcagagcggagagcatcgtccaggagctggagctgctgggc
cgagtgacgtctctggacctgaaccacgaccgcaccgagctgctcacctgctccagagac
gacctggtgaagatcatcgacctgcggacctgcagcgtgaagcagacgctcagcgctcag
ggcttcaagtgtggagccgattggaccagagtcaccttcagtcctgacggccgctacgtg
gccggaggctcagctgacggagcgctgtacatctggaacgtcctgacgggggaagtggac
cggactctggaccggaaacacaactcggccatcaactcggtgtcctggtcgccttcagga
gccttcgtggccagcgtggagaagggcagcagggccatcctgtggtctgacatgtga
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