Pseudoliparis swirei (Mariana hadal snailfish): 130209509
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Entry
130209509 CDS
T09868
Symbol
sh3tc2
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130209509 (sh3tc2)
Membrane trafficking [BR:
pswi04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
130209509 (sh3tc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_2
SH3_2
TPR_1
SH3_9
TPR_MalT
SH3_1
SNAP
TPR_16
Motif
Other DBs
NCBI-GeneID:
130209509
NCBI-ProteinID:
XP_056295192
LinkDB
All DBs
Position
19:complement(2154868..2179181)
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AA seq
1475 aa
AA seq
DB search
MRAESWKQHTDISPAELDALWREPDALGEASQHVSGTDIMTRAAGEEDDGPAVEAGEGGA
EPGKGGAEPDNYWKKKEALRGSTMSLGDKFSSEIELLFTGRRRSSEQPDHVLQEALRTRL
RVVESNSQDVIQLFKDLSARLVSVHAEKDSFVLTFKTVEEVWKFSTYLALGYVARCLENF
LCDQTFWLDPELLGDLQITVTVDEERLATLYLGLLLQEGSFFAKALFTRSDEDEDNEEQL
QFKKNELLMVRDTGQDSMWEGAMLSTGRHGLVPVNAMQPLPYPFYQWFLRNYPGNAGCSP
ANTEPFEHAIVTGSCVAVVDHSPGDRDELQLSLGDIVEVRGLLVRGLDVFIATHSCTGHT
GFIHKAHVKPLDTTPLDGRLVFLTQEERSGLARVNPCSAEPVDGGGLLERLFSSDISSVY
RLDRLDETDFLYIRKRPRHDHKVPPSSRQSVMSDRSGGGTPPYQSSPHTSFSYSSHRLSL
YQSHNPLQRDGECLSFALDDTFREMDEFQEDPPLSLEGNSWEGEDSEFSDPTLTLLNQPR
FQDDLLPLYDLQCSFLRVTFGGRTEDELSGHLEGVREGAKRTGLDWAHRRACFLLGRLCA
RKLKLSQARVYYEEALGVGVDGFSDTPLLVALYTNLTAIYLKQRMADKLPPTLEKAAALL
LCLPCHAFTSADELELLQLLLRRSVVTADKHLEARVCFLVAGLFLARRRPDDALPFVERL
QFLSATLSAAEGRPVVPLDLNWLLSRLYHRKHMPYLALASLSLDSRPDHSLPDAFWRIEL
FVRNSVRLNPSWNEGTSLLPAQIVTYLQQALVIAERGEELKTQRDLCQGLATVYLQHGAL
DKAVLCARRAVETGGHINEEEGFEASVLLGWLLVLTGEAERARSVLQPLLTSLQGTDSPT
QRGVIHNLLALCLRQQGCVPEAGRHLHSALAISRESGHQRNQALALANLGCLALDVGAPL
VAERFLVRSLHLFLELWESPVDEEHVQTFLWLGRSYKDRRRSHDSRACYEMGLLIALHAG
NLHSRMVVAKVLSRVYADMLLYSQSIVYYEHCVSVCRELKDKRLEGEYLEILSSLYLSLN
TERSSRKSLDYTKQSLRISIDLGKREEESETWLQVGRIYYLIQEDELADMYLQAAVKTAL
RMNDHHFVMSIYEEAGDVYFKGSRNRMASVPFYRDGALPFARSVDDVHSEFRLLSKLTEL
LMKHGEPEEALQYAELAAQSAGKTGVRVNERTAFHRLATVHYDQQHYELAENFYLRSVTL
CPASLQDAAEARYFTKLYCRLGDLTLHRLKDSFDAVGYFHLALAAALEDRANPAALYVVY
MKLAEIHSRHMPDAALCRHYADRARGLKRVLSGEEEEHGEDEDVEKDEDPVGASPGNENS
GGNSPPRTGAAHGDAEDVRADARTGEERGDPADASRSESQAAGGESYSDGVPSETFETAR
EQISDSSGSTGTLQTHDADAAGRSPDAKQRACIQI
NT seq
4428 nt
NT seq
+upstream
nt +downstream
nt
atgagagcggagagctggaagcagcacacagacatctcccctgccgagctggacgccctc
tggagggagccggacgcgctcggggaagccagccaacacgtctccggaaccgacatcatg
acccgagctgcaggtgaggaggatgacggtccagcggtggaggcgggcgaaggaggggcg
gagcctggtaaaggaggggcggagcctgacaactactggaagaagaaggaggccttgaga
ggaagcactatgtcactgggagataaattctcctcagagatcgagctgctgttcacgggg
cggcggcgctccagcgagcagcccgaccacgtcctgcaggaggcgctgcgcacccgcctc
cgggtggtggagagcaacagccaggacgtcatccagctcttcaaggacctgtcggctcgt
ctggtgtccgtccacgccgagaaggacagcttcgtcctcacgttcaagaccgtggaggaa
gtctggaagttctccacttacctggccttaggttacgtggctcgctgcctggagaacttc
ctgtgtgatcagaccttctggctggaccccgagctgctcggcgacctgcagatcaccgtc
accgtggacgaggaacggctggccaccctctacctgggcctgctgctgcaggagggctcc
ttcttcgccaaggcgctgttcaccagaagcgacgaagacgaggacaacgaggagcagctg
cagttcaagaagaacgagctgctgatggtgagggacacggggcaggacagcatgtgggag
ggcgccatgctgtccaccgggcgccacggcctggtgccggtcaacgccatgcagccgctg
ccgtaccccttctaccagtggtttctgaggaactacccgggcaacgccggatgctcgccg
gcaaacacggaaccgtttgaacacgccatcgtgaccggttcctgcgtcgcagtggtggac
cacagcccgggggaccgggatgaactccagctcagcctgggggacatcgtggaggtccgg
ggtctcctggtccggggtctggatgtcttcatcgcgacgcactcctgcacgggtcacacg
ggcttcatccacaaggcccacgtcaagcctctggacaccacgccgctcgacgggcggctg
gtcttcctgacgcaggaggagcggagcggcctcgctcgggttaacccctgcagcgccgag
ccggtcgacggcggcggcctgctggagagactcttctcctccgacatcagcagcgtgtac
cggctggaccgactggatgagacggacttcctgtacatcaggaagcggccccgacacgat
cacaaggttcctcccagcagccgccagagcgtcatgtcggacaggagcggcggcggcacc
cccccctaccagtcctccccccacacgtctttctcgtactcctcccatcgcctgtcgctc
tatcaatcccacaatcctttgcaacgcgacggggagtgcctgtccttcgctctggacgac
accttcagggagatggacgagttccaggaggacccgcctctgtccttggaggggaacagc
tgggagggggaggactccgagttcagcgaccccacgctgaccctgctcaaccagccgcgc
ttccaggacgacctcctgccgctgtacgaccttcagtgttccttcctgcgggtgaccttc
ggcgggaggactgaggacgagctgtcgggtcacctggagggcgtccgggagggcgccaag
aggacgggcctggactgggcccaccgccgggcctgcttcctcctggggagactctgcgcc
cggaagctgaagctgtctcaggcccgcgtgtactacgaggaggctctgggcgtcggcgtg
gacggcttctccgacacgccgctcctcgtcgccctctacacgaacctcaccgccatctac
ctgaagcagcgcatggcggacaagctgccgccgaccctggagaaggccgcggcgctgctc
ctctgcctgccctgccacgccttcacctccgcggacgagctggagctgctgcagctgctg
ctccggcggtcggtggtgacggccgacaagcacctggaggctcgcgtctgcttcctcgtg
gccggcctcttcctcgcccgccggaggcccgacgacgccctgcccttcgtggagcggctg
cagttcctctcggcgacgctctccgccgccgaggggcgtcccgtcgtccccctggacctc
aactggctgctgagccggctctaccaccggaagcacatgccgtacttggcgctggcgtcc
ctgagcctggactcgaggccggaccactcgctgcccgacgccttctggaggatcgagctg
ttcgtcaggaactcggtgcgcctgaacccgagctggaacgaaggcacctccctgctcccc
gcgcagattgtgacgtacctgcagcaggcgctggtcatcgcggagcgaggggaggagctg
aagacccagagggacctgtgtcagggcctggccaccgtctacctgcagcacggcgctctg
gacaaggcggtgctctgcgcccggcgggccgtggagacggggggtcacatcaacgaggag
gagggcttcgaggcctccgtgctgctcggctggctgctggtgttgacgggggaggccgag
agggcccggagcgtcctgcagccgctgctcacgtccctccagggcacagacagccccacg
cagcgcggcgtgatccacaacctcctggctctgtgtctgaggcagcagggctgcgtcccg
gaggccgggcggcacctccactcggccttggcgatctccagggagagcgggcaccagagg
aaccaggccctggctctggccaacctgggctgcctggcgctggacgtgggggcgcccctg
gtggccgaacgcttcctggtcagatcgctacatctgtttctggagctctgggaaagcccc
gtcgacgaggagcacgtccagaccttcctgtggctggggcggagctacaaggacaggagg
cggagccacgacagcagggcttgctatgaaatggggctgctgattgcactgcatgctggg
aacttacacagtcggatggtggtggccaaagtgctgagtcgagtgtacgccgacatgctg
ctgtacagccagagcatcgtgtactacgagcactgtgtgtcggtgtgccgagagctgaag
gacaagcggctggagggggagtacctggagatcctcagcagcctctacctgtcgctcaac
accgaacggtcgtctcgtaaatctctggactacaccaagcagagcctgaggatttctata
gatctgggcaagagggaggaggagtcggagacctggctgcaggtgggacgcatctactac
ctcatccaggaggacgagctggccgacatgtacctgcaggcggcggtgaagacggccctg
aggatgaacgaccaccacttcgtcatgagcatctacgaggaggccggagacgtctacttc
aaaggctccaggaaccgcatggcgtcggtgcctttctacagggacggcgctctcccgttc
gcccgcagtgtggacgacgtccactccgagttccgcctgttgagtaaactgacggagctg
ctgatgaagcacggcgagccggaggaggcgctgcagtacgccgagctcgccgcgcagagc
gccgggaagacaggtgtgcgtgtgaacgagaggacggccttccaccgtctggccaccgtc
cactacgaccagcagcattacgagctggcggagaacttctacctgaggtcggtgaccttg
tgtccggccagcctgcaggacgccgccgaggcgcgctacttcaccaagctgtactgccgg
ctgggagacctcaccctgcaccggctgaaggactccttcgacgcggtgggctacttccac
ttggctctggcggcggcgctggaggaccgcgccaaccccgcggctctgtacgtggtctac
atgaagctggcggagatccacagccgccacatgcccgacgccgcgctgtgccgacactac
gccgaccgagcccggggtctgaagagggttctgtctggggaggaagaggagcacggagag
gacgaagacgtagagaaggacgaggaccccgtcggcgcttcgccgggaaatgaaaacagc
ggaggcaactcgcctccgaggactggcgccgctcacggagacgcggaggacgtacgcgcg
gacgcccgtaccggagaggagcgcggcgacccggcggacgcctcgcgctccgagtcgcag
gccgcgggcggcgagtcgtacagcgacggcgtcccgagcgagaccttcgagacggccagg
gagcagatctcggactccagcggctccaccggcacgttacaaactcacgacgccgacgcg
gccggccggtcgcccgacgccaagcagcgggcgtgcatacagatctga
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integrated database retrieval system
