KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130209511
Entry
130209511         CDS       T09868                                 
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04382  Cornified envelope formation
pswi04510  Focal adhesion
pswi04512  ECM-receptor interaction
pswi04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    130209511 (col4a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    130209511 (col4a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    130209511 (col4a2)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    130209511 (col4a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pswi04147]
    130209511 (col4a2)
   00536 Glycosaminoglycan binding proteins [BR:pswi00536]
    130209511 (col4a2)
Exosome [BR:pswi04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   130209511 (col4a2)
Glycosaminoglycan binding proteins [BR:pswi00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   130209511 (col4a2)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 130209511
NCBI-ProteinID: XP_056295199
LinkDB
Position
2:7006561..7063968
AA seq 1669 aa
MCGTMHGQRNRLMLLCLFVAVLASGVHAGGKKHSGPCGGRDCSGGCQCFPEKGARGQPGL
LGLQGSQGPLGRPGDYGIEGPKGQKGDHGRSGPIGPKGSVGMSGVPGFSGNNGIPGHPGQ
AGPRGKPGADGCNGTRGDSGTPGQPGYDGSPGFPGQPGWKGSKGDSLKLSVYMRRFRGDP
GTAGGNGIFGPQGNPGWQGTRGLPGLQGPRGSPGPRGPKGTIPKVLKGLTGEQGDIGPPG
LPGNSTHQQVQPLYGPSGHSGEKGELGDPADNKGETGMLGNRGSRGLPGPDGRPGPRGEP
GEHGPTGGDGATGVRGDPGELVSAGSFWPWSSAAGGPPGPTGEHGVKGGRGSVGDQGPPG
PPGRPASEAQQLVWDFMGPFGFKGESGEKGQRGELGRPAERSGPSGNNGRLGGEGPPGHK
GTWAEFFKGSPGGRGRPGNGGFKGGKGDHGVCECSVVNSSPGLPGPAGHRGDAGMTGEFG
REGDSGDHGRQGDAGLPGSFGLSGPPGQKGRKGDPSVASQKGYPGDPGNHGRDGEPGTSG
APGRNGLPGLPGNRGLPGDGTRGEAGDKGPPGRPGRPGAPGLSGTDGTVLGGHKGHRGLP
GDDGIAGYHGVPGTPGRPGGCSPPGDGGQVDVTGPCDVVPGPPGSPGLPGPSGLPGYSGS
PGPKGLKGSLGVDGEKGETGDQGAGGRSGPPGFVGVRGDLGVPGSKGLAGPPGVPGVSGR
YGAPGDRGAHGEILGASQGPPGDTGPPRSQGNKGQSGDPGASGYPGMAGMPGMIGFKGER
GPLGLEGEEGRPGPEGKYGSPGDPGQAGPPGPHGRTGQPGVTGERGTGGDPGPPGPIGLK
GIPGFYGDDGAVGETGSPGEVGQPGADGRSGLPGIKGYKGSPGMAGFEGVRGGLGGRGIS
GNAGEPGALGLVGLKGLKGGSGEKGDRGLRGPSGVKPLIPTQKMVDMKGPKGDHGKYGNQ
GFTGPRGLKGLPGVPGYWGTHGLPGEPSKKKGYHGDAGPEGLPGIKGVPGLTGNRGISGF
EGMQGYRGIKGSPGAYGASGDKGRKGVNGEIGQRVDLPGPTGLRGEHGLPGELGQKGLFG
QTGDTGLPGFNGIEGKKGEPGDPGLGGFPGSDGQNGNPGNQGEKGFPGRLGQDGHPGFPG
FPGDKGFPGFKGLYGLHGLKGQKGFPGTQGLDSTGPAGEAGSKGEKGEGGDPNHQPGGPG
TVGLKGFQGPLGDYGPPGMPGYRGPQGPNGTMGRPGHSGDPGSTGHKGYRGYPGATGFPG
VDAPPSEKGVLGSNGFPGVPGRKGIKGHQGSFGYRGPHGVSGKNGVKGEQGVMGVPGVMG
VKGERGPAGPKGNRGTGGFPGFPGNQGPPHVPLRVPGERGPAGPQGIQGPKGFKGEPGPH
GPPGDAGFVGPSGQRGMAGISGRPGTPGFRGEFGNVGYPGLQGMEGRRGNPGVSGRPGMP
GRSVSVGYLLVKHSQTDHTPMCPVGMAKLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRFN
SMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEEEIKPYISRCSVCEAPSVAIAI
HSQDITIPQCPAGWRSMWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFIECNGAK
GTCHYFANKHSFWLTSIDQSFHTEPASETLKAGQLLSRISRCQVCMKNL
NT seq 5010 nt   +upstreamnt  +downstreamnt
atgtgtgggaccatgcacggacaacgcaacaggctgatgctcctgtgcctcttcgtggcc
gtcctcgcctcaggagtgcacgcaggtgggaagaagcacagcggcccctgtggaggaaga
gactgcagcggaggctgtcaatgtttcccagagaagggtgccaggggacagcccgggcta
cttggtcttcagggctctcaggggcctctggggagaccaggtgattacgggatcgaagga
ccgaaggggcagaagggtgaccatggtcgtagtggccccattggtccgaaaggcagcgtg
ggaatgtccggcgttcctggattctctggaaacaatggcattcctggccacccgggacaa
gccgggcccagggggaagcccggggcggacggctgtaacgggacacggggagactcaggg
acgccggggcaaccgggctacgacggctcacctggttttcctggacaaccaggctggaag
ggatcgaagggagactctctgaagctgagtgtgtacatgaggcgcttcaggggagatcca
ggcacagcagggggcaacgggatatttggtcctcaaggaaacccgggatggcagggcacc
agaggcctaccgggactgcagggtcccagagggtctcccggtccccgtggaccgaagggc
acgatccccaaagtgctgaagggactcacaggagaacaaggagacatcggaccaccgggg
cttccagggaactcgacccatcagcaagtgcagcccctctacggcccctcgggacacagt
ggagagaaaggagaattaggagatccggctgacaacaaaggggaaaccgggatgctgggg
aaccgcgggtcgcggggtttacctgggccagacggccgtcctggaccgcggggggagccc
ggagaacatggaccgacaggtggagatggtgctacgggagtccgaggtgacccgggagaa
ctggtttcagccggatccttttggccctggtcctcagcagcaggtggtccccccggtcca
actggtgagcacggtgtgaagggagggaggggctcggttggagaccaaggcccccccgga
cccccgggacgccccgcctctgaagctcagcaactagtttgggatttcatggggccgttt
gggttcaagggggagtccggagagaagggccaacggggggaactgggacgccctgcggaa
cggtcaggaccctcaggaaacaacgggcgcctggggggcgaggggccgccaggacacaaa
ggaacatgggcggagttcttcaaaggttctcccggtgggagaggaaggcccggcaacgga
ggctttaagggaggaaaaggtgatcacggcgtgtgtgagtgcagcgtggtgaactcttca
ccggggctgcctggccctgccggtcaccgtggcgacgccgggatgactggagagtttggt
cgtgagggtgattcaggagatcacggtcgccaaggagacgccgggctgcccggatccttt
gggctcagcggtcctccgggtcaaaagggtcggaaaggggacccgagtgtggcctcgcag
aaaggatatcctggagatccagggaaccatgggcgagacggggagccgggaacgtcgggc
gctccgggccgtaacggtctgcctggtctcccggggaaccgaggtcttccaggagacggc
accagaggagaagcgggagacaaaggtccaccgggtcggcccggtcgacccggggcaccc
gggctcagtgggacagacggtactgtcctcggaggccacaaaggtcaccgtgggttacct
ggtgacgacggcatcgccggctatcatggcgttccggggacacctggcaggccaggcggc
tgtagtccaccaggagatggaggacaggtggatgtgacaggcccgtgcgatgtggtgccg
ggacctcctgggtcacctggacttccaggacccagtggacttccaggttactcaggttct
ccgggtccaaagggactaaaaggctcattaggagtagacggagaaaaaggagaaacggga
gatcaaggcgccgggggccgctccggaccgccaggttttgtgggtgtccgtggagacttg
ggggtcccggggagcaaaggtttggcgggaccccccggggtgcctggcgtgagcggccgg
tacggggcgccgggcgatcggggcgctcatggagagatccttggagcctcgcagggaccg
cctggggacacgggaccgccgaggagtcaagggaacaagggccagagtggtgatccagga
gcgtcgggctacccaggaatggccggcatgcccggtatgatcggcttcaagggcgagcgt
ggccctctgggcctcgagggggaggaggggagacctggaccggaaggcaagtatggctcc
cccggtgaccctggacaagccggtccacctgggccacatgggaggactggacagccaggt
gtcactggagagagggggactggaggagacccgggtcctccgggtcccatcgggttaaaa
ggcatcccggggttctacggtgacgacggtgccgttggagagaccggctcaccgggggaa
gtgggacagcccggcgccgatggacggtcaggacttccaggaatcaagggatacaaaggg
tctcccggcatggccggcttcgagggcgtcagggggggtctaggggggcggggcatcagc
gggaacgccggagaacctggagctctgggtctggttggcctgaaaggactgaagggtgga
agtggagagaaaggggatcgaggtttgagagggccgtccggggtcaagcctctcataccc
acccagaagatggtcgacatgaagggacccaaaggagaccacgggaaatatggaaaccaa
ggtttcacagggccgagaggtcttaagggtttgcctggtgtgccgggctactggggaact
catggtcttcctggagagcccagcaaaaagaaaggttaccatggagacgcaggtcccgaa
gggttgccaggtataaaaggagtgccgggcctcactggaaatcgaggaatttctggtttc
gagggaatgcaaggctacaggggaatcaaaggaagtcctggtgcctacggagcctcagga
gacaaaggaaggaaaggagtcaacggtgagataggccagcgcgtagaccttccaggaccc
acgggattgagaggagagcatggtcttccaggagaactcggccagaaaggtttatttgga
caaacgggggacactggactacctgggttcaatggtatcgaaggtaaaaagggggaacca
ggtgatccaggactaggagggttcccaggctctgacgggcagaatggaaaccctggtaac
caaggggaaaagggctttcctggacgtcttggacaagatggacatcctgggtttcctggt
ttccctggagacaaaggcttccctggcttcaagggactttatggattacatggactgaaa
ggacagaagggtttcccaggaacacaaggtctggactccactggaccagctggggaagca
ggaagcaaaggagagaagggagagggtggcgaccccaaccatcagccaggtggtcctggc
accgtgggtttgaaaggcttccaggggcctctaggtgactatggtccacctggaatgccg
gggtaccgcggcccccagggacccaacgggaccatgggcagaccaggacacagtggtgac
cctggctctacaggacataaagggtaccgaggttacccaggagccactgggtttcccggt
gtagatgctcctccgagtgaaaagggggtcctgggatccaatgggttccctggagtcccg
ggtaggaaaggaatcaaaggacaccaaggatcctttggatacagggggccacacggtgtc
tctgggaagaacggagtaaaaggagagcaaggggtgatgggagttcctggtgttatgggc
gtgaagggagaaagaggaccagctggtccaaaaggaaaccggggaactggaggtttcccc
gggttcccgggaaaccagggtcctcctcacgtccccctcagagtcccaggagagaggggc
cctgccggacctcaggggatccaaggaccaaaggggttcaagggggaaccagggccacac
ggaccccctggggatgcaggttttgtgggacccagtgggcagagaggcatggctgggatc
agcgggcgaccgggaacgcctggatttcgtggagagtttgggaatgtgggctaccccggc
ctgcaaggcatggaaggtcgccgcggcaaccctggtgtctccgggcgccctggcatgccc
ggccgcagcgtcagcgtgggctacctgctggtgaagcacagtcagaccgatcacaccccc
atgtgtccggtgggcatggccaagctgtgggacggctacagcctgctgtacttcgagggc
caggagaaagcccacaaccaggacctcggtctggccggatcctgcctcccgcgcttcaac
agcatgcccttcctgtactgcaaccccggagacatctgttactacgccagcaggaacgat
aagtcctactggctgtcgaccaccgctcctcttcccatgatgcccgtggaggaggaggag
atcaaaccgtacatcagccgctgctccgtatgcgaagctccgtccgtcgccatcgccatc
cacagccaggacatcaccatccctcagtgtcccgcgggctggcgcagcatgtggatcggt
tactccttcctcatgcacaccgcagcaggaaatgaaggcggcggtcagtccctgtcgtcg
cccggctcgtgcttggaggacttccgcacaacgcccttcatcgagtgcaacggggccaaa
ggcacgtgtcactactttgccaacaagcacagcttctggctcacctccatcgatcagtcg
ttccacaccgagccggcctcagagacgctcaaagccggacagctgctgtcgcgcatcagc
cgctgccaggtgtgcatgaagaacttgtga

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