Pseudoliparis swirei (Mariana hadal snailfish): 130209524
Help
Entry
130209524 CDS
T09868
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked
KO
K16498
protocadherin delta 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
130209524 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pswi01009
]
130209524 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130209524 (pcdh11)
Protein phosphatases and associated proteins [BR:
pswi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130209524 (pcdh11)
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Protocadherins
130209524 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
DUF6249
TMEM154
Motif
Other DBs
NCBI-GeneID:
130209524
NCBI-ProteinID:
XP_056295225
LinkDB
All DBs
Position
19:complement(16408278..16534568)
Genome browser
AA seq
1267 aa
AA seq
DB search
MDLLSQAPVLVVLLACGALLCLAQERDYTVKEEQPENVRIGNLHKDLDLNLDPNIRLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTNHRIDREKLCAGVFAEKRCYYEIEVAVLPDEIF
RLVKIRFLIEDVNDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVSEFGLDIIETPEGDKWPQLIVQQNLDREQKDTFVMKIKVEDGGNPPKSSTAILQVTIS
DVNDNRPVFKDSELEVTVPENAPVGTSVAQFHASDADLGSNALIHFAFSNQISASTKHHF
AIDGSTGLMTVKQPLDREVTPVHKLIVLASDGSSSPSRATVIVNVTDVNDNVPSIDTRYI
INLVNGTVLLSENAPLNTKIALITVTDKDADLYGKVACYTDHDVPFRLKPVFNDQFLLET
AAHLDFETTREYAIKIVASDRGTPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPENND
PSTQLIKISATDADSGRNAEIIYTLGPDAPDGFNIDRRSGILSVGKRLDREKQERYSFTV
IARDNGSASLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDTDAG
DNAIVTLSLLNGKDNFIIDPQTGVIKPNITFDREQQSSYTFMVKAVDGGQPPSSSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVRTTTTPGAVVTRVFAIDNDTGMNAELQYSIISSII
ITSRVSPRGLFVIDKTTGNITLQEKVVAADQGLHRLVVKVKDLGQPESLQAIALIHLFVN
DTVSNVTFIQEQLRKSMETPLDRNIGDSEVTPQASGYVIVVIAIIAGTMTVILVIFVTAL
VRCRQTPRHKVVQKGKQSGEWVSPNQDNRQIKKKKKRKKRSPKSLLLNFVTIDESKPDDP
THEHVNGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPV
APKKHHVIQELPLDNTFVVGCDSLSKCSSTSSDPYSVSECSCQGGFKTAGQITTRQNLSQ
TPEKSFNSPLPICPHKEACQLGKITSVNTQRRVTFHLPDGSQESCSDSGLGDPEPSSTAS
TTQPLPLNFPLEEYYEQTSPNSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILGH
SDSCWMPPALAQFQGPGSNSPTSTPITTAITGTMSSLGFQQSCARGAKANMVSMGVMDGR
HTLGRSVPTKDELDNGINRPQFYNTLDRHCSKKEGSFKVIPLASFSSPGQQTPTGGGSSS
FLHEHQL
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggacttattaagtcaggctcctgtgctggtggtcttgctcgcctgtggggcattgtta
tgtctggcccaggagagggactacacggtgaaggaggagcagccggagaacgtccgcatc
gggaacctgcacaaggacctggacctcaacctggaccccaacatcaggttgtcctcgccg
ctgcagttcaagcctgtgtacaagacgggtgacgtgcctttggtgagggtggaggccaac
acaggagagatcttcaccaccaatcacagaattgaccgggagaagctgtgcgcaggggtc
ttcgctgagaaacgctgctattatgagatcgaggtggccgtgctgccggatgagatcttc
cgcttggtaaagatccgcttcctgattgaggatgtaaacgacaacgcgccccttttccag
tccactgtaataaacatctccatcccggagaacacagccatcaacactcgatacccggtg
ccctcagcatttgaccctgatgtcggaatcaatgggatccaacattatgaactggtcaag
agtgtcagtgagtttggcttagacatcatagagactcctgaaggggacaagtggccgcag
cttatcgttcagcagaacctggatcgcgagcagaaggacacctttgtgatgaagataaag
gtagaggatggtggcaaccctcccaagtccagcaccgccatcctccaagtcaccatttcc
gatgtcaatgacaaccgtcccgtcttcaaggacagtgagctggaggtcacagtgccggag
aatgctcccgtgggaacatcggttgctcagtttcatgcctcggacgcagacctgggttcc
aacgcactgatccacttcgccttcagcaaccagatctctgcctcaaccaaacatcacttt
gccattgacggctctacaggactgatgactgtgaagcagccactggacagggaggtaact
cctgttcacaaactcatcgtccttgccagtgacggcagctccagcccatccagagccaca
gtgattgttaatgtaacagacgttaatgacaatgttccctcaatagacactcgctacatc
atcaaccttgttaatggaactgttctgctgtccgagaacgctcctttgaacaccaaaata
gctctcatcactgttactgacaaggatgcagatctttatggtaaagtagcttgctacact
gaccatgatgttccttttcgattgaagcctgtctttaatgaccaatttttacttgagaca
gctgcccacctagattttgagacgactcgagaatatgcaattaagatagtggcttcggat
agggggacgcctcctttgaacacttcagctatggttttaattaaaatcaaggatgagaac
gacaatgcacccatcttcccccagccggaaatccaactttccataccagagaacaatgac
ccctctacacagttaataaaaatcagtgccactgacgctgacagtggacgtaatgctgag
attatttatactcttggccctgatgcgcctgacgggtttaacatagacagacggtcagga
attctctccgttggcaaacgactggacagagagaagcaggagaggtactcattcactgtc
atagcgagggacaatggctcggcgtccctgcagagcaatgtcactgtcaggctaatcgtc
caggaccttaatgacaacagcccagctttcacacaccctgagtacaacttttatgttcct
gagaacctgcctctctatggaactgtgggcttaatcacagtgacggacacagatgcggga
gataatgcgattgtaaccctgtcccttttgaatgggaaggataatttcatcatcgacccc
caaaccggtgtgatcaaacccaatatcacctttgatagggagcagcaaagctcctacacc
tttatggtcaaagcagttgatggagggcaacctccaagctcctcctacgccaaggtcaca
atcaatgtggtcgatgtgaatgacaatcgccctgtgttcgtcatcccatcctccaattac
tcatatgacctagtgcgaaccaccaccacccctggcgctgtggtcaccagagtgtttgcc
attgacaatgacacaggtatgaatgctgagctgcagtacagcattatcagtagcatcatc
atcacatccagggtctcccccagaggtctctttgtcatcgacaagacaacggggaacata
acactgcaggagaaagtagtggcagctgatcaggggttgcacaggctggtagtcaaagtc
aaagatctgggtcagcccgagtcattacaagctatcgcacttattcacttgtttgtcaat
gacactgtgtcaaatgttaccttcatccaagagcagctgcgaaaaagtatggaaacaccc
ttggatcgtaacataggggacagtgaggtaacacctcaagccagtggatatgtgattgtt
gtcatagcaatcattgcagggaccatgactgtcatcttggtgatatttgtgactgccttg
gtgcgctgccgacagacacccagacacaaagtggtacagaagggcaagcagagtggcgag
tgggtgtcacccaaccaagacaaccgtcagatcaagaagaaaaagaagagaaagaagcga
tctcccaagagcctcctcttgaactttgtgaccattgatgaatccaagcctgacgacccc
acccatgagcatgttaatggcacactggatctccctgtggagttagaggagcaaaccatg
gggaagtacaactgggccacaacgcccaccaccttcaaacctgacagcccagatttagcc
aagcattacaagtccgcgtcccctcagcctacatttcaaatcaaaccggagactccagtg
gccccaaagaaacatcatgtgatccaggaactccccttggacaacacgttcgtggtgggc
tgtgactctctctccaagtgctcatcgactagctccgatccgtacagtgtctcagagtgc
agctgtcaggggggattcaagactgcggggcaaatcaccacccgacagaacctgagccag
acaccggagaagtctttcaactcaccgctccccatttgtcctcataaggaggcctgtcaa
cttggcaagataacctctgtgaatacccagcgccgcgtgacgttccatcttccagatggt
tcccaggagagttgcagtgacagcgggttgggagacccggagccgagcagcacagccagc
accacccaacctcttcccctcaacttccccctggaggagtactatgagcaaacatcacca
aacagccgcactgagggagatgggaactcagaccctgaatcgactatcgaggtgaacctt
cagaaggccttggctgaggcctctgagacctgtacccaggagtgtctgatactgggccac
tctgacagctgctggatgcccccagccctggcccagttccagggtcctggcagtaacagc
cccacctccacccctatcaccaccgccatcaccggtacaatgtcctctcttggcttccag
cagagctgtgcccggggagccaaagctaacatggtcagcatgggggtcatggatggccgc
catacccttggcaggtctgtgcccacaaaagatgaactggacaatgggatcaaccggccg
caattctacaacaccctggatagacattgcagtaagaaagagggctccttcaaggtcatc
cccctggcgagcttctcctctcctgggcagcagacgcccactggagggggcagcagctcg
ttcttacacgagcaccagttgtaa
DBGET
integrated database retrieval system
