KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130209526
Entry
130209526         CDS       T09868                                 
Symbol
col4a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04382  Cornified envelope formation
pswi04510  Focal adhesion
pswi04512  ECM-receptor interaction
pswi04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    130209526 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    130209526 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    130209526 (col4a1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    130209526 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pswi04147]
    130209526 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:pswi00536]
    130209526 (col4a1)
Exosome [BR:pswi04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   130209526 (col4a1)
Glycosaminoglycan binding proteins [BR:pswi00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   130209526 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 130209526
NCBI-ProteinID: XP_056295230
LinkDB
Position
2:complement(6955805..7006496)
AA seq 1642 aa
MLLPTGTLLLLAALCCSLDPTGAEGCGASCGKCDCSGVKGGKGERGFPGLQGNMGFPGMQ
GHEGPPGPMGTAGGLGDHGSPGLKGVRGPSGLPGFPGNAGLPGINGNDGPPGVHGIPGCN
GTKGDRGGDGTPGYAGLQGPPGISGIPGMKGDPGGVIGIVPLRGDRGFPGTPGLPGSNGL
PGPIGPPGHRGYHGPKGETGFPGPPGEMGDKLSFESEKGDKGDPGFRGPPGPPGPPSQGV
EGYTTVHIPGPRGELGGLGEKGDKGYCTPHLNGVKGEIGPPGGIGKSGKGGENGPQGEKG
FSGSPGYTGSQGEKGERGPPVHGDGDGSPGPSGPPGFPGLEGEKGFAGPQGEAGPPGRYA
EGPRGESGQTGSAGEKGDRGLDGESLVGPPGQPGTSGQAGPPGIPVNPNECDIEKGAPGP
AGPPGLQGELGQKGDFGDTCVQCESFGPPGASGPEGPKGDRGPPGPVGGKGDKGVSGFSG
EPGRPGSAGIPGLIGKPGAVGEPGDIFAAPGLKGDEGLPGLSGTSGQPGLDGQPGRDGLP
GIPGFKGESAQEGLKGEHGPAGDPGVTGPPGERGQPGLPGFGRPGESGENGSAGRPGIPG
TPGPAGEKGDSGKGLSTPGPQGVPGPHGNTGIPGLPGDMGLHGDPGVPGFPGHKGDQGHP
GIGFPGPHGPKGFNGLPGDSGLTGDPGKPGQEGLNGEPGRPGPKGEPGQGLPGLKGSQGP
PGTIGFEGEKGSIGQPGIPGQEGQTGPAGPQGVKGGVGPPGTPGQVGLPGAPGKGSPGAP
GPQGPAGDQGPYGGHGVKGDKGYPGPSGLDMPGPQGEKGAPGFPGGPGSNGLSGPPGFLG
RDGLVGNQGVKGEMGVMGTPGVPGYPGPPGLDGSSGLRGDPGLTGPIGVIGEFGSKGERG
DQGLQGPAGNMSDVDMEHMKGEKGDLGNSGSYGSTGEKGHRGLPGNPGMPGENGESGLLG
QPGEKGASGFPGDSGRMGPNGQKGSGGDMGIPGVSGPKGTKGDIGTSGHPGFRGTDGQTG
DKGAYGEPGIGLAGVPGDKGHTGQPGFPGSSGERGLKGHEGMPGKPGVQGTRGEKGLIGY
TGQSGRPGEKGTAGLSGASGETGVDGRSGEGGLQGPPGEPGEKGDPGVDGIPGSSGERGG
PGLTGHGFPGPHGVHGGKGDKGGHGFPGTPGHPGVSGIKGDKGLSGSMGPQGETGERGLM
GVSPEGPKGATGEAGAGGESGSSGAPGASGVPGRDAEKGDKGDQGLPGFQGESGHKGGPG
AAGLSGQTGLPGIDGQRGERGLQGVHGFPGTRGNFGDIGFKGEVGDQGFSGENGKDGPPG
LPGPSTFTKGDPGFLGIQGLPGPQGPYGLPGHKGQQGMTGISGPKGEDGIHGYNGQSGAK
GDTGLPGPQGPRGHPGPSGPNGVPGQVGHPGXSSMDHGFLVTRHSQTVEVPLCPEGTSLI
YDGYSLLYIQGNERSHGQDLGTSGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPE
PMPMTMAPITGEGIKPFISRCSVCEAPAMIIAIHSQTIMIPVCPHSWDSLWIGYSFVMHT
SAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDNEMFRKPVP
ATLKAGNLRTHISRCQVCMKRT
NT seq 4929 nt   +upstreamnt  +downstreamnt
atgctgctaccgaccggcacgctgctcctgctggcggctctctgctgcagcctagacccg
acgggcgccgagggctgcggggcatcatgtggaaaatgtgactgcagtggtgtgaaagga
ggaaagggtgagcgtggatttcctggtcttcaaggtaacatgggatttccaggaatgcag
ggacatgaaggtcctcctggaccaatgggcaccgcgggaggtctgggtgaccacggatct
cctggactgaagggagtgcggggtccttctggtctgccaggtttcccaggaaacgcagga
ctaccaggtatcaatggaaacgatggcccaccaggtgtgcatggtatcccaggatgcaat
gggactaaaggagacagagggggggatggcactcctggttatgctggtcttcaaggacct
cctggtatctcaggaattcctggaatgaagggcgaccctggcggtgttatcgggattgtc
cccctgagaggagacagaggattccccgggacacctggattacctggatcaaatggactt
cctggacccatcggacctccaggacatcgaggatatcatggacccaaaggtgaaactgga
ttccccggccctcctggagagatgggtgacaagctgtcctttgagagtgagaaaggagat
aagggtgacccaggtttccgtggcccccccggccctcccggacctccatcacagggagtg
gaaggatacaccaccgtgcacatccctggaccacggggtgagttaggaggactgggggag
aaaggagacaaaggctattgcaccccacatcttaacggtgtcaaaggtgaaatcggtcca
cctggaggaataggtaaatctggcaagggtggagagaacgggccacagggagaaaaaggc
ttctccggatcccctggatacactggttctcagggtgaaaagggagaaagaggaccacca
gttcatggtgatggtgatggttcccctgggccttccggtcctcctggatttccaggatta
gaaggagaaaaaggttttgctggtcctcagggggaggcaggtccaccaggccgctacgcc
gaagggcctcgaggggagagcggtcagacgggaagcgctggagagaaaggagacaggggt
ctcgatggagagtctctcgttggacctccaggacaaccagggacctctggacaagccgga
cccccgggaataccggttaaccctaatgaatgtgacattgagaaaggagctcctggcccc
gctggacctccagggttacaaggggaattgggacagaaaggtgactttggagatacgtgt
gttcagtgtgagagcttcggccctcctggagcatctggtccagaagggcccaaaggagat
cgaggacctccggggccagtaggcggtaagggagataagggcgtgtccggcttttctgga
gaacctggaagacccggttctgcaggtattcctggcttgattggaaaacccggtgccgtt
ggtgagccaggagacatctttgcagctccgggtctgaagggggacgaaggtctgcccggt
ctctctggtacatcagggcagccaggactggatggacagccagggagagacggcctccca
ggtatacctggcttcaaaggagaatcggcccaagaaggcctcaagggtgagcacggaccc
gctggggaccccggtgtgactgggcctccaggtgagaggggtcaaccgggcctgccgggc
ttcggccggccaggagagtctggagagaacggcagtgcggggagacccggcattcctgga
actcctggacccgctggtgaaaaaggggactcgggtaaaggtctgagcactcctggacct
caaggagtacctggaccacacggcaacactggcatacctggacttccaggtgacatgggt
ctgcatggagaccctggggtgccgggctttcctggacataagggcgaccaaggccaccct
ggaattggattcccaggcccacacggccctaaaggattcaatggacttccaggagactca
ggattaacaggagatcctggaaaaccaggacaggaaggcttgaatggagaacctggtcga
cctggaccaaaaggtgaaccggggcagggtctcccaggcttaaaaggttctcagggtccc
ccaggaactattggcttcgagggagaaaagggttccattggacagccgggtattcccggt
caggaaggccagacgggacccgccgggcctcagggagtcaaaggtggcgtgggacccccg
gggacccctgggcaggttggcctaccaggtgctccaggtaaaggctcccctggagctcct
ggaccacaaggaccagctggagaccaagggccgtacggtgggcatggtgttaagggagat
aagggctacccgggtccttctggtctggacatgccgggtcctcagggagagaagggagcc
cccgggttcccaggaggcccaggttctaacggactctccgggccaccgggcttccttggc
cgggatggacttgttggaaaccaaggtgttaaaggtgaaatgggggtcatggggacacca
ggagtaccaggatatcctggaccacctggattagatggatcttctggactcagaggtgat
cccggtcttactggacccataggtgttattggagagtttggaagtaaaggagaaaggggg
gaccaaggtctgcagggcccggctgggaacatgagcgacgtggacatggagcacatgaag
ggggagaagggagacctcggaaactcaggtagctatgggtccactggagagaagggccac
cgaggacttcctggtaaccctggaatgccgggcgaaaatggagagtctgggttacttgga
cagccaggtgagaaaggagcctctggttttcccggagactcgggcaggatgggacccaac
ggtcagaaaggcagcgggggcgacatgggaataccgggtgtgtctggtcccaagggtacg
aagggagacatcggtacatcgggtcatcctggattcagaggcaccgacggacagacagga
gacaagggagcctacggagaacccggcattgggctagcaggagttcccggagataagggt
cacacaggccagccgggattcccaggatcatccggggagagaggtctgaagggtcacgag
gggatgcccggcaagccaggagtgcagggcaccagaggagaaaaggggctcattggttac
acgggtcagtcgggtcgaccgggtgagaagggaaccgcggggctttcgggggcttcagga
gaaacgggtgttgacgggcggtctggtgaaggaggccttcagggaccgcctggagaacct
ggagagaagggagaccctggagtggatggtatccctggatcctcaggggagagaggaggc
ccagggctaactggacacggcttccctggaccacacggggtgcatgggggcaaaggtgac
aaaggtggccatggcttccccggcactcccggtcatcccggtgtctctggtatcaaaggg
gacaagggcctctcaggctccatggggccccagggggagacaggagagcgggggctcatg
ggagtctccccggagggccccaagggagcgacgggagaggcgggagcaggaggagaatca
gggtcctcaggagcaccaggagcctctggagtgccaggcagggatgccgagaagggggac
aaaggagaccaaggcctgcccggcttccagggagagtctggacacaagggaggccccgga
gccgccggtctgtcgggacaaactggccttccaggtatcgatggccagaggggagagagg
ggcctgcagggcgtccatggcttcccagggacgaggggtaatttcggggacattggattc
aaaggagaagttggagaccaaggattctcaggagagaatggcaaggacggaccccccggc
ctccccgggcccagcaccttcaccaaaggagatcctgggttcctagggatacagggccta
ccgggtccccaggggccgtatgggcttcctggacacaaaggacaacaaggcatgacgggt
atctcggggccaaaaggtgaagatggcattcatgggtataacggccagtctggagccaaa
ggagacaccggcctcccgggcccacagggacccagaggacaccccggcccctcaggacct
aacggcgttccaggtcaagtgggtcaccccggcncctcgtccatggatcacggcttcctg
gtgacccgccacagccaaacggtggaggttcctctgtgtcccgagggaacctcgctcata
tatgacggctactcgctgctctacattcaaggcaacgagcgctcccacggccaggactta
ggtacgtcgggcagctgtctgaggaagttcagccccatgcccttcctgttctgcaacatc
aacaacgtgtgcaacttcgcttctcgtaacgactactcctattggctcacctccccggag
cccatgcccatgaccatggcgcccatcaccggcgaaggcatcaaacccttcatcagcagg
tgttctgtgtgtgaagcgccagccatgatcatagcgattcacagccagaccatcatgatc
ccagtatgccctcacagctgggactctctctggattggctactcctttgtcatgcacacc
agtgctggtgctgagggatccggccaggctctggcctctcccggctcctgcttggaggaa
ttccgcagtgctccgttcatcgagtgtcacggccgaggaacctgcaactactacgccaac
tcctacagcttctggctcgccaccattgaagacaacgagatgtttaggaaacctgtcccc
gcgacgctaaaagcaggcaatctgcgaacacacatcagccgctgtcaggtgtgcatgaag
aggacatag

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