Pseudoliparis swirei (Mariana hadal snailfish): 130209526
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Entry
130209526 CDS
T09868
Symbol
col4a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04382
Cornified envelope formation
pswi04510
Focal adhesion
pswi04512
ECM-receptor interaction
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130209526 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130209526 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130209526 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
130209526 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pswi04147
]
130209526 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130209526 (col4a1)
Exosome [BR:
pswi04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
130209526 (col4a1)
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130209526 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
130209526
NCBI-ProteinID:
XP_056295230
LinkDB
All DBs
Position
2:complement(6955805..7006496)
Genome browser
AA seq
1642 aa
AA seq
DB search
MLLPTGTLLLLAALCCSLDPTGAEGCGASCGKCDCSGVKGGKGERGFPGLQGNMGFPGMQ
GHEGPPGPMGTAGGLGDHGSPGLKGVRGPSGLPGFPGNAGLPGINGNDGPPGVHGIPGCN
GTKGDRGGDGTPGYAGLQGPPGISGIPGMKGDPGGVIGIVPLRGDRGFPGTPGLPGSNGL
PGPIGPPGHRGYHGPKGETGFPGPPGEMGDKLSFESEKGDKGDPGFRGPPGPPGPPSQGV
EGYTTVHIPGPRGELGGLGEKGDKGYCTPHLNGVKGEIGPPGGIGKSGKGGENGPQGEKG
FSGSPGYTGSQGEKGERGPPVHGDGDGSPGPSGPPGFPGLEGEKGFAGPQGEAGPPGRYA
EGPRGESGQTGSAGEKGDRGLDGESLVGPPGQPGTSGQAGPPGIPVNPNECDIEKGAPGP
AGPPGLQGELGQKGDFGDTCVQCESFGPPGASGPEGPKGDRGPPGPVGGKGDKGVSGFSG
EPGRPGSAGIPGLIGKPGAVGEPGDIFAAPGLKGDEGLPGLSGTSGQPGLDGQPGRDGLP
GIPGFKGESAQEGLKGEHGPAGDPGVTGPPGERGQPGLPGFGRPGESGENGSAGRPGIPG
TPGPAGEKGDSGKGLSTPGPQGVPGPHGNTGIPGLPGDMGLHGDPGVPGFPGHKGDQGHP
GIGFPGPHGPKGFNGLPGDSGLTGDPGKPGQEGLNGEPGRPGPKGEPGQGLPGLKGSQGP
PGTIGFEGEKGSIGQPGIPGQEGQTGPAGPQGVKGGVGPPGTPGQVGLPGAPGKGSPGAP
GPQGPAGDQGPYGGHGVKGDKGYPGPSGLDMPGPQGEKGAPGFPGGPGSNGLSGPPGFLG
RDGLVGNQGVKGEMGVMGTPGVPGYPGPPGLDGSSGLRGDPGLTGPIGVIGEFGSKGERG
DQGLQGPAGNMSDVDMEHMKGEKGDLGNSGSYGSTGEKGHRGLPGNPGMPGENGESGLLG
QPGEKGASGFPGDSGRMGPNGQKGSGGDMGIPGVSGPKGTKGDIGTSGHPGFRGTDGQTG
DKGAYGEPGIGLAGVPGDKGHTGQPGFPGSSGERGLKGHEGMPGKPGVQGTRGEKGLIGY
TGQSGRPGEKGTAGLSGASGETGVDGRSGEGGLQGPPGEPGEKGDPGVDGIPGSSGERGG
PGLTGHGFPGPHGVHGGKGDKGGHGFPGTPGHPGVSGIKGDKGLSGSMGPQGETGERGLM
GVSPEGPKGATGEAGAGGESGSSGAPGASGVPGRDAEKGDKGDQGLPGFQGESGHKGGPG
AAGLSGQTGLPGIDGQRGERGLQGVHGFPGTRGNFGDIGFKGEVGDQGFSGENGKDGPPG
LPGPSTFTKGDPGFLGIQGLPGPQGPYGLPGHKGQQGMTGISGPKGEDGIHGYNGQSGAK
GDTGLPGPQGPRGHPGPSGPNGVPGQVGHPGXSSMDHGFLVTRHSQTVEVPLCPEGTSLI
YDGYSLLYIQGNERSHGQDLGTSGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPE
PMPMTMAPITGEGIKPFISRCSVCEAPAMIIAIHSQTIMIPVCPHSWDSLWIGYSFVMHT
SAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDNEMFRKPVP
ATLKAGNLRTHISRCQVCMKRT
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atgctgctaccgaccggcacgctgctcctgctggcggctctctgctgcagcctagacccg
acgggcgccgagggctgcggggcatcatgtggaaaatgtgactgcagtggtgtgaaagga
ggaaagggtgagcgtggatttcctggtcttcaaggtaacatgggatttccaggaatgcag
ggacatgaaggtcctcctggaccaatgggcaccgcgggaggtctgggtgaccacggatct
cctggactgaagggagtgcggggtccttctggtctgccaggtttcccaggaaacgcagga
ctaccaggtatcaatggaaacgatggcccaccaggtgtgcatggtatcccaggatgcaat
gggactaaaggagacagagggggggatggcactcctggttatgctggtcttcaaggacct
cctggtatctcaggaattcctggaatgaagggcgaccctggcggtgttatcgggattgtc
cccctgagaggagacagaggattccccgggacacctggattacctggatcaaatggactt
cctggacccatcggacctccaggacatcgaggatatcatggacccaaaggtgaaactgga
ttccccggccctcctggagagatgggtgacaagctgtcctttgagagtgagaaaggagat
aagggtgacccaggtttccgtggcccccccggccctcccggacctccatcacagggagtg
gaaggatacaccaccgtgcacatccctggaccacggggtgagttaggaggactgggggag
aaaggagacaaaggctattgcaccccacatcttaacggtgtcaaaggtgaaatcggtcca
cctggaggaataggtaaatctggcaagggtggagagaacgggccacagggagaaaaaggc
ttctccggatcccctggatacactggttctcagggtgaaaagggagaaagaggaccacca
gttcatggtgatggtgatggttcccctgggccttccggtcctcctggatttccaggatta
gaaggagaaaaaggttttgctggtcctcagggggaggcaggtccaccaggccgctacgcc
gaagggcctcgaggggagagcggtcagacgggaagcgctggagagaaaggagacaggggt
ctcgatggagagtctctcgttggacctccaggacaaccagggacctctggacaagccgga
cccccgggaataccggttaaccctaatgaatgtgacattgagaaaggagctcctggcccc
gctggacctccagggttacaaggggaattgggacagaaaggtgactttggagatacgtgt
gttcagtgtgagagcttcggccctcctggagcatctggtccagaagggcccaaaggagat
cgaggacctccggggccagtaggcggtaagggagataagggcgtgtccggcttttctgga
gaacctggaagacccggttctgcaggtattcctggcttgattggaaaacccggtgccgtt
ggtgagccaggagacatctttgcagctccgggtctgaagggggacgaaggtctgcccggt
ctctctggtacatcagggcagccaggactggatggacagccagggagagacggcctccca
ggtatacctggcttcaaaggagaatcggcccaagaaggcctcaagggtgagcacggaccc
gctggggaccccggtgtgactgggcctccaggtgagaggggtcaaccgggcctgccgggc
ttcggccggccaggagagtctggagagaacggcagtgcggggagacccggcattcctgga
actcctggacccgctggtgaaaaaggggactcgggtaaaggtctgagcactcctggacct
caaggagtacctggaccacacggcaacactggcatacctggacttccaggtgacatgggt
ctgcatggagaccctggggtgccgggctttcctggacataagggcgaccaaggccaccct
ggaattggattcccaggcccacacggccctaaaggattcaatggacttccaggagactca
ggattaacaggagatcctggaaaaccaggacaggaaggcttgaatggagaacctggtcga
cctggaccaaaaggtgaaccggggcagggtctcccaggcttaaaaggttctcagggtccc
ccaggaactattggcttcgagggagaaaagggttccattggacagccgggtattcccggt
caggaaggccagacgggacccgccgggcctcagggagtcaaaggtggcgtgggacccccg
gggacccctgggcaggttggcctaccaggtgctccaggtaaaggctcccctggagctcct
ggaccacaaggaccagctggagaccaagggccgtacggtgggcatggtgttaagggagat
aagggctacccgggtccttctggtctggacatgccgggtcctcagggagagaagggagcc
cccgggttcccaggaggcccaggttctaacggactctccgggccaccgggcttccttggc
cgggatggacttgttggaaaccaaggtgttaaaggtgaaatgggggtcatggggacacca
ggagtaccaggatatcctggaccacctggattagatggatcttctggactcagaggtgat
cccggtcttactggacccataggtgttattggagagtttggaagtaaaggagaaaggggg
gaccaaggtctgcagggcccggctgggaacatgagcgacgtggacatggagcacatgaag
ggggagaagggagacctcggaaactcaggtagctatgggtccactggagagaagggccac
cgaggacttcctggtaaccctggaatgccgggcgaaaatggagagtctgggttacttgga
cagccaggtgagaaaggagcctctggttttcccggagactcgggcaggatgggacccaac
ggtcagaaaggcagcgggggcgacatgggaataccgggtgtgtctggtcccaagggtacg
aagggagacatcggtacatcgggtcatcctggattcagaggcaccgacggacagacagga
gacaagggagcctacggagaacccggcattgggctagcaggagttcccggagataagggt
cacacaggccagccgggattcccaggatcatccggggagagaggtctgaagggtcacgag
gggatgcccggcaagccaggagtgcagggcaccagaggagaaaaggggctcattggttac
acgggtcagtcgggtcgaccgggtgagaagggaaccgcggggctttcgggggcttcagga
gaaacgggtgttgacgggcggtctggtgaaggaggccttcagggaccgcctggagaacct
ggagagaagggagaccctggagtggatggtatccctggatcctcaggggagagaggaggc
ccagggctaactggacacggcttccctggaccacacggggtgcatgggggcaaaggtgac
aaaggtggccatggcttccccggcactcccggtcatcccggtgtctctggtatcaaaggg
gacaagggcctctcaggctccatggggccccagggggagacaggagagcgggggctcatg
ggagtctccccggagggccccaagggagcgacgggagaggcgggagcaggaggagaatca
gggtcctcaggagcaccaggagcctctggagtgccaggcagggatgccgagaagggggac
aaaggagaccaaggcctgcccggcttccagggagagtctggacacaagggaggccccgga
gccgccggtctgtcgggacaaactggccttccaggtatcgatggccagaggggagagagg
ggcctgcagggcgtccatggcttcccagggacgaggggtaatttcggggacattggattc
aaaggagaagttggagaccaaggattctcaggagagaatggcaaggacggaccccccggc
ctccccgggcccagcaccttcaccaaaggagatcctgggttcctagggatacagggccta
ccgggtccccaggggccgtatgggcttcctggacacaaaggacaacaaggcatgacgggt
atctcggggccaaaaggtgaagatggcattcatgggtataacggccagtctggagccaaa
ggagacaccggcctcccgggcccacagggacccagaggacaccccggcccctcaggacct
aacggcgttccaggtcaagtgggtcaccccggcncctcgtccatggatcacggcttcctg
gtgacccgccacagccaaacggtggaggttcctctgtgtcccgagggaacctcgctcata
tatgacggctactcgctgctctacattcaaggcaacgagcgctcccacggccaggactta
ggtacgtcgggcagctgtctgaggaagttcagccccatgcccttcctgttctgcaacatc
aacaacgtgtgcaacttcgcttctcgtaacgactactcctattggctcacctccccggag
cccatgcccatgaccatggcgcccatcaccggcgaaggcatcaaacccttcatcagcagg
tgttctgtgtgtgaagcgccagccatgatcatagcgattcacagccagaccatcatgatc
ccagtatgccctcacagctgggactctctctggattggctactcctttgtcatgcacacc
agtgctggtgctgagggatccggccaggctctggcctctcccggctcctgcttggaggaa
ttccgcagtgctccgttcatcgagtgtcacggccgaggaacctgcaactactacgccaac
tcctacagcttctggctcgccaccattgaagacaacgagatgtttaggaaacctgtcccc
gcgacgctaaaagcaggcaatctgcgaacacacatcagccgctgtcaggtgtgcatgaag
aggacatag
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integrated database retrieval system