Pseudoliparis swirei (Mariana hadal snailfish): 130209541
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Entry
130209541 CDS
T09868
Symbol
arhgef6
Name
(RefSeq) rho guanine nucleotide exchange factor 6 isoform X1
KO
K05729
Rho guanine nucleotide exchange factor 6
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04518
Integrin signaling
pswi04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04518 Integrin signaling
130209541 (arhgef6)
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
130209541 (arhgef6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130209541 (arhgef6)
Membrane trafficking [BR:
pswi04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
130209541 (arhgef6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF67_u2
betaPIX_CC
RhoGEF
SH3_2
RhoGEF67_u1
SH3_9
SH3_1
CH
PH
SOS1_NGEF_PH
Mis12
CAS_CSE1
CENP-Q
DUF3972
COG6_N
Motif
Other DBs
NCBI-GeneID:
130209541
NCBI-ProteinID:
XP_056295247
LinkDB
All DBs
Position
19:18774560..18797016
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AA seq
781 aa
AA seq
DB search
MNPEEQTVTWLISLGVLGSPKKNIADPEEFLKTSLKDGVVLCKLAERLIPGFTPKYCQDP
RTEADCITNSREFLRGCSSLKVEGFEPEWLYTGENFGKVLTTLLAVNFATQECAAERSCS
QSGSHSPSQSTPSHTLSSAKSKGSLRRQSKSVEMSENGGGGQLMVKARFNFKPNNEDELS
FNKGDLIHVMRQEEGGWWEGSLNGKTGWFPSNYVREIKPCEKPLSPKGTQLTKNYYSVVV
QDILEHEREFVKELQTVLSCYLRALQAGDKLSSAESASLCGNLEEILTFQQGLCVALEDC
TKVPEGQQRVAGCYLNQMCQIKNLYLTYCSSHPSAVCILTDHSEELDKFMESQGASSPGI
LTLTTSLSKPFMRLDKYPTLLQELERHVEEAHPDYADIVKATAVFRNLVTQCQELRKRKN
LELQILSEPVRGWEGDSMKSLGHVAYMSQAHIKNGSSEEKEERYLMLFPTMLVMLSASPR
MSGFIYQGRLPLAGTTVTRHAEDADNGHYALDITGSMTDRMTVFCSTAQELQEWLEHLQP
YTKGGSPAGTISKTAEGKPLSLVGTPTHLSHLGSVISRGPLEPPKTSKPWSLSCLRPAPP
LKPSAALGYKERMSYIMKDSSKSPRPIKKFLPGNRKKERKHSDDEVQTRKSTAALEEDAQ
ILRVIEAYCTGASLHQTTTGVRLSVRKECVPQVLLPEEEKIIVEEMKSNGQTVIEENFCV
SFRSLVDAVYALKDEVHDLKKENKWMKQFLEEEQKSRKELERVVRKLAKQKNDSARDDCG
H
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgaatccagaggagcagacggtaacctggttaatatctctcggagtgctcggctcgccg
aaaaagaatatagcagatcccgaggagtttttgaaaacatcgctgaaggatggggtcgtc
ttgtgcaagctcgcggagcggctcatacctggcttcactcccaagtattgccaggatccg
agaactgaagctgactgcatcaccaatagcagggagtttttaagaggatgctcgtccttg
aaagtggaggggtttgaaccagagtggctatacactggtgagaactttggcaaggtgctg
accactctgctggcagtcaacttcgccacacaagaatgtgctgctgagaggtcatgttcg
cagtccggctctcactctcccagtcagtcgacaccttcacacacactctcctcggccaaa
tccaaaggctctctgcgtagacaatccaaatcagtggaaatgtctgagaatggtggagga
ggacagctgatggtgaaggctcgcttcaacttcaagcctaacaacgaggatgagctgtcg
tttaataaaggcgacttgatccacgtgatgcggcaggaggagggcggatggtgggagggc
tcactcaacggcaagacgggctggttccccagcaactacgtccgggaaatcaaaccctgc
gagaagccattgtctcctaaaggcactcagctgaccaagaactactacagtgtggtggtg
caggacatcttggaacatgagcgggagtttgtcaaagaactacaaacggtgctcagctgt
tatctacgagccctgcaagccggcgacaagctgagcagtgcggaaagcgctagcctctgt
ggaaacctggaggagatactcaccttccagcagggactgtgtgtggctttggaggactgt
accaaagtccccgagggccagcagcgagtggcgggctgctatctaaaccagatgtgtcag
atcaagaatctgtacctgacttactgttccagccatccttcagcggtttgcatcctcact
gaccacagtgaggaactcgacaagttcatggagagccaaggagccagttctccagggatc
ctgaccctgaccaccagtctcagtaagcccttcatgaggctcgacaaataccccacgctg
ttacaggagctggagagacatgtggaggaagcccaccccgactatgctgacattgtaaag
gcaacagcagtatttaggaacctcgtgacgcagtgccaggagctgcggaagcgcaagaac
ctagagctccagatcttgtcggaaccagtgcgtggctgggagggagatagcatgaagagc
ctgggtcacgtggcctacatgtcccaggcccacatcaaaaatgggtccagtgaggaaaaa
gaggagcgctatctcatgctgtttcctactatgttagtcatgctctctgccagtccccgg
atgagtggctttatttatcagggaagactgccactggcaggcaccacggtaacgagacat
gcagaggacgcagacaatggccactatgccttggacattacaggaagcatgaccgatcgt
atgacagtgttctgcagtactgcccaggagctacaagaatggctagagcaccttcagccc
tacaccaaaggaggaagccctgcaggaactatctcaaagactgcagaaggcaagccactg
agcctggtcggcaccccgactcacctgtcccacctgggcagcgtcatcagtcgcggcccc
ctagagccgccgaagaccagcaagccctggtctctcagctgcctgcgcccggctccgccc
ctcaaaccctctgccgcactgggatacaaagagaggatgtcttatatcatgaaggactcc
agcaagagcccacggcccataaagaagttcctgccaggcaataggaagaaagagcggaag
cactccgatgacgaagttcaaacgaggaaaagcacggcggcgctggaggaggacgctcag
atcctgagggtcatcgaggcgtactgcacgggggccagcctgcaccagaccaccacgggt
gtgcgtttatcggtgcggaaagagtgcgtccctcaggtgcttctgccagaggaagagaag
atcattgtggaggagatgaagagcaacgggcagacagttattgaggaaaatttttgtgtt
tctttcaggagtctggtggatgctgtgtatgctctcaaggacgaggtccatgacctgaaa
aaggagaataagtggatgaagcagtttctggaagaggagcagaagtctcgcaaagagctg
gagcgagtggtccggaaactggccaagcagaagaacgatagtgcgagggacgactgcggc
cactga
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