Pseudoliparis swirei (Mariana hadal snailfish): 130209550
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Entry
130209550 CDS
T09868
Symbol
frmpd1b
Name
(RefSeq) FERM and PDZ domain-containing protein 1 isoform X1
KO
K23954
FERM and PDZ domain-containing protein 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
130209550 (frmpd1b)
Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
Other domain-containing proteins
FERM domain-containing proteins
130209550 (frmpd1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FERM_M
RA_2
PDZ
PDZ_6
FERM_C_FAK1
FERM_f0
PDZ_2
Motif
Other DBs
NCBI-GeneID:
130209550
NCBI-ProteinID:
XP_056295263
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All DBs
Position
19:13838892..13861669
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AA seq
1717 aa
AA seq
DB search
MEEKERCRSRSPARRTCRVQQVVGTIIRRTRESLSRERLLGDGRSQRSNSLSNQNFQAKL
TLQITRDPVLDSSTGHGFILTTNAPLLVRDIAAGSPADGILYPGDQVLQINDIGVEDLSD
EQVENLLRDLEDCITVTILRHMTNPKSSIMSAEKRARLRNNPVKVRFAEEVVVNGHTQGN
SLLFLPNVLKVYLENGQTKAFKFDNSTTVKDIVLTLKDKLSLRAIEYFALVLEQQYSITK
LLLLHEDEFIQKVVQKKDSHDYRCLFRVCFVPRDPMDLLQDDSSTFEYLFLQSVGDVLLE
RFAVEMKCNTALRLAALHMHERLDSCGQTRASIKSITREFGMDSFISPTLLSNMREKDLR
KAISYHLKKIQSLLEPRQKVISASQARLAYLTQLGELISYGGRSYAATMMLQDREVLVSL
MVGAKYGMSQVINHKLNMISTLVEFSSISRVELLSESDKVSVLRISLHDMKPFALLMDSP
AAKDLGCLLGGYCKLLIDPSVNVFRLGRPKVRVHRIPAEEGVCGKFGVIEGVCYESLSSY
VSRCCSDSDDSSDEDDPMDSQNYKRPDPASQDWEERRREEEEKRREEERKEKEEHKDKQE
VKIIVTTEGIENEGEEEEGATGIGLRTFSIMDEEMNLESNWYHTDSRVTSSFSSLSSGSL
SAALEESSAAAKAPSRLDALRGTCTSEDRPGLDVHQPYLLEPKRHQGPLRPTNLNYRGND
NSCLCFSDLSKDDLLPSPPEATSDDDNEDEEQGVAGLRRISKIPSSRDLRMIDSIPFQRS
PIKRKKKVPPKVPVRTSSIPVDKEGQAEQRLSKDEEGLFLTPSPNPKPALLVKETASESE
DEFFDAQERFTPPVPDLSDAELADRRNANRLSGGWIGPSAVLGKEPSSPLANKANCSKIK
REVETLKGPTNKLTNQQASLPEPSQKPQVKVKPLLAPKPQLPPKPKIIPPKSPKHGRSYA
HCNGDASGRLSSELLEMEPDTMEFKSVTSGAGGLPLSSPLIRAVRCSKQPLPMTTRRTEE
KTKKQENSPTKNTDLMHDNGSHVVSNDKAYILDEQETPRIEEKSNGSALPTRKPPNLLPL
PRSNSGTKLAIPPPVAPKPTSPTNFHPLSLPASSPVSPTDPSKGIFKDSVTTPNGIHPWS
SRNGTVQSGSRRVSQSHESLSPKNADPPLTLTTSLTSTNSKGVGGLESREPAKSGSGSEL
RTSSSSLGGRLPASALRGKIQSLPWYMTRSQEILGTLDYPSTSSINGDTSGFGSGLSVAS
GLSEFNKTPVKEKETVNSKSGGKKNILEDGAEVVIATIKEAQEVTSHIKKAYGTNSSHTN
LTFKDNSAHSGSVSSEQPQSRTHSAVGLGGVSSMQIGDDSLTSSISDTAPPQEHREACGC
RTVYANCFSGDTEDGISFNEELTIYEFSRRTRPKPARPAAVSSPTPSPKPNILSLLRDNP
RPLSTFSTASSELSPVVSRPVSPTNSFGGPLRTLSNKNIGGLKGGFASLRQDIDQLLLVL
ERGSLEQTQQKSSQDTKQDITGIKVGPDLNHNGTVGNTIPVPDPNCTGTSMAAMTEAERS
LLQAEARRLASGCQRATRVGWAPDEALRSLSNSFSALVHLSAACLRTNPCPGCEICQKAS
LVHGDEDDDSQEAMDKLKEIVGLYQEFVGAVETAGTGAGVGGKSVGLTGSGQGQSEGVRL
LAKRCTVLISSVFALTQLFRTRTPDTADTSVHIPVNF
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaaggagcgatgtcggagcaggtctccagctcggagaacctgtcgggtgcag
caggtggtgggaacaataatacgacgtacccgagagtcgctcagcagagagcggttgctc
ggcgacgggaggtcgcagcgctccaacagtctgtccaatcagaacttccaggccaagctg
acgctgcagatcaccagggacccggtcctggacagcagcactggacatggcttcattctc
accaccaatgcacccctgctggtcagggacatcgctgcagggagtcctgcagatgggata
ctgtacccaggggaccaggtgctgcagattaatgacataggggtggaggacctgagcgat
gagcaggtggagaacctcttacgggacttggaggattgtatcactgtgactatcctgcgg
cacatgacaaatcccaagtcatccatcatgtcggcagagaagagagctcgtctgaggaat
aatccagttaaagtgcgctttgcagaggaggtggtggtcaacgggcacactcagggaaac
tctcttctcttcctgcccaatgtcctaaaagtctatttagagaatggacagacaaaggcc
ttcaagtttgacaacagcaccaccgtcaaggacattgtgctgactctgaaggataaactg
tccctccgggccattgagtactttgctctggtgctagagcaacagtacagcatcaccaaa
ctgctgctgctgcacgaagacgagttcatacagaaggtggtgcagaaaaaagactcccat
gactacagatgtctgttcagggtgtgtttcgtcccgagagaccccatggacctactgcag
gatgactcctctacctttgagtacctatttctacagagtgttggggacgtgctgctggag
cgttttgcagtagagatgaagtgtaacactgcgctccgcctggctgccctgcacatgcac
gagaggctagatagctgtggacagaccagagcctccatcaagagtattacgagggagttt
ggcatggacagcttcatctctcccacactgttaagcaacatgagggaaaaggacctgagg
aaagccatcagctaccacctcaaaaagatccagtccctgctggagccgcgccagaaggtc
atttctgcaagtcaggctcggttggcctacctcactcagctcggagaactcatttcctat
gggggacgctcctacgcagccacgatgatgcttcaggatagggaggtgttggtcagtctg
atggtgggagccaaatatgggatgagtcaggtcatcaaccacaagctcaatatgatctct
accctggttgagttcagcagcatcagccgagtggagctgctctctgagtcggacaaagtc
agcgtactgcgcatctcactgcacgacatgaagccatttgccttactgatggactctccg
gcagccaaagacttagggtgtctgcttggaggctactgcaaactccttatagatcccagt
gtcaatgtcttccgtctggggcgcccaaaagtgagggtgcaccgaattcctgctgaagaa
ggtgtgtgtgggaagttcggcgtaatagagggcgtgtgctatgaatccctatcaagttat
gtgtctcgctgctgtagtgactcagatgactcatcagatgaggatgacccaatggattct
cagaattacaaacgcccagacccagcaagccaggactgggaagaaaggaggagagaggag
gaagagaagaggagagaggaggaaaggaaagagaaagaggagcacaaagacaaacaggaa
gtgaagataatagtgacaacagaaggaatagaaaatgagggtgaagaggaagaaggagca
acaggaattggtctacgtacatttagtattatggatgaagaaatgaacctggagagtaac
tggtaccacactgactcacgggtcaccagcagcttctccagcttgtccagtggctccttg
agtgctgccctggaggagagcagtgccgcagccaaagccccatcgcgtctggatgcgctc
cgtggaacatgcacaagcgaggatcgaccaggcttggatgttcaccaaccctacctcctg
gagcccaaacgccaccaagggcccttgcgacccaccaacctcaattaccgtggcaatgac
aactcgtgcctttgcttttctgatctctccaaggatgatttactccctagccctcctgag
gctactagtgatgatgataatgaggatgaagagcaaggagtggcaggactcagacgcatt
tctaagatacccagttcaagagatttgagaatgattgacagcataccctttcaaagatca
cccattaaaagaaagaaaaaggtccctccaaaagtcccagtgaggactagttcaatacct
gtggataaagaaggacaggctgagcagcgcctctccaaggacgaagagggtctatttcta
acaccgtcaccaaatcccaaaccagctctcttggtcaaagagactgcctcagagtctgaa
gatgagttttttgatgcacaggagagatttactcctccagttccagatttatcagacgct
gagctggctgaccgacggaatgctaatcggttaagtggaggctggattggtccttcagct
gtcctggggaaagaaccatcctccccccttgccaataaagctaattgctctaaaatcaaa
agagaagtggagacgcttaaaggccctacaaataaacttaccaaccaacaggccagttta
ccagagccatctcagaaacctcaagttaaggtcaaaccgctattggcacctaagccccaa
ctgcctcccaaacctaagatcattccccctaaatcccccaagcatggaagatcatatgcc
cactgcaatggggatgcctctggacgactttcctctgaacttctggaaatggagccggac
accatggagttcaagtctgtcacatcaggggcaggtggactgcctctctcatcacccctg
atcagagcagtgcggtgcagcaagcaaccactacccatgacaacccgacgaactgaggaa
aagacaaagaagcaagaaaacagcccaacaaagaatacagatttgatgcatgataatgga
tcacatgttgtttccaatgacaaagcatacattcttgatgaacaggaaactcctaggatt
gaggaaaaaagcaatggaagtgctctacccacaagaaaaccaccaaacttactccctctc
cctcgctctaattcaggtacaaagttagccattccccctccagtagcacccaaacccact
tctcccaccaatttccaccccttatcacttcctgctagctctcctgtctccccaacagat
ccaagcaaagggatattcaaagatagcgtcactacgccaaatggaatccatccttggagc
agccgcaatggcaccgtccagtccggatccaggagggtctctcagagtcatgaaagcctg
tcgcccaaaaatgcagatcctcctctcacccttaccacctccctcacttcaaccaactcc
aaaggtgttgggggccttgaaagcagagagcctgcaaaatctggatcaggatcagaactg
aggaccagctcctccagcctgggaggtagactgccagcttctgctctgagagggaagatc
cagtctctgccttggtacatgacccgttctcaggagattttgggaactctggactatccc
tccactagctccatcaatggagacacatctggatttggctctggcttgtctgtagccagc
ggtctatcagaatttaacaaaacccctgttaaggaaaaagagaccgtgaactcaaaatca
ggagggaaaaagaacattttagaggatggagctgaggttgtcatagccaccatcaaggag
gcccaggaagtgacctcacacataaaaaaggcctatgggacaaacagctcccacactaat
ctaacttttaaagacaatagtgcacacagtgggagtgtttcctccgagcagcctcagtca
cggacccattcagcagtggggttgggaggtgtgtccagcatgcaaatcggggatgactca
ctaacctcctcaatctcggacactgcgcctccacaagagcatcgggaggcatgtggctgc
cgcaccgtttacgccaactgtttcagtggagacactgaggatggcataagctttaatgag
gagctcaccatttatgagttctcacgtcgcacacgccccaaacctgcccgacctgcagct
gtctcttctcctacaccttctccaaagcccaatattctgtcactgctgagggacaatccc
cgtccactctccactttctccactgcatcctctgaactcagtcctgtagtttcacgcccg
gtttcccccacaaactcatttggtggtcctcttcgtacacttagcaacaagaatattggt
gggcttaagggaggttttgcctccctacgtcaagatatagaccaacttttgctggtctta
gaaagaggatcacttgagcagactcaacagaaatcatctcaagacacaaagcaggatatt
acaggtataaaagtggggcctgacctaaatcacaatggaactgtaggcaatactatccca
gtaccggacccaaattgtactgggacaagcatggccgccatgacagaggccgaaagaagt
cttctccaggcagaggctcgacgattagcatctgggtgtcagcgggccacacgtgtaggc
tgggctcctgatgaagccctacgctctttatcgaacagcttcagtgccctggttcacttg
tctgctgcctgcctgcgaacaaatccatgccctggttgtgaaatctgccagaaggcaagt
ctggtccacggggatgaggacgatgacagccaggaggccatggacaagctgaaggagata
gtgggtctctatcaagagtttgttggggctgttgagacagctggaactggtgccggggtt
gggggtaaaagtgtgggcctcactgggtctggacagggtcagagtgaaggagtcaggctt
ctggccaagcgttgcactgtgctcatctcgtccgttttcgcactcacacagctctttcgg
acacgcacaccagacaccgcagacacgtctgtccacatacctgtcaacttttga
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integrated database retrieval system
