Pseudoliparis swirei (Mariana hadal snailfish): 130209559
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Entry
130209559 CDS
T09868
Symbol
si:ch73-233f7.1
Name
(RefSeq) protocadherin beta-15 isoform X1
KO
K16499
protocadherin delta 2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130209559 (si:ch73-233f7.1)
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Protocadherins
130209559 (si:ch73-233f7.1)
BRITE hierarchy
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_3
Trypan_PARP
Motif
Other DBs
NCBI-GeneID:
130209559
NCBI-ProteinID:
XP_056295279
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All DBs
Position
19:14382017..14388867
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AA seq
1026 aa
AA seq
DB search
MDHILPRGSWVPVTGLVVCLLLCACVVDLVLAQIRYSIPEELEHGAFVGNIAEDLGLDVA
KLSARRFRIVSGAKRQYLEVNLENGILFVNEKMDREDLCERSPSCFLHLQVVIENPLELY
RVEVEILDVNDNSPNFPWSEFNLDITESAAPGSCFPLESALDQDVGTNSLRSYQLSANEH
FVLNIQTRNDGSKFAELVLDTPLDWEQQKRHEMVLTAFDGGSPGRSGTALITITVLDSND
NVPVFDRSVYRASLVENTQRGTLVLKLNATDLDEGSNGEVTYAFSGHAPLKVRELFSVDP
YTGEIRVKGIVDYEKASVYELYVQAKDRGPSAVAVHSKVLVDILDVNDNAPEVILTSVST
PVQEDAPPGTVIAVISVMDRDSGENGNVDCQIPSNVPFQLHSSFKNYYTLVTSEFLDREA
VSEYNITLTARDLGSPPLSTRKTMLVQVSDINDNPPRFSQPSYTVYVTENNAPGASICSV
TAFDPDSNQNAYLSYSILEGQIQGMPVSTYVSINSDNGNIYALRSFDYEQLRNFQILVQA
QDAGFPPLANNITVNVFVLDQNDNAPVIVSPLPKNGTVATEVVPRLVDAGYLVTKITALD
ADAGQNSRLSYQVLHATDPGLFSVALYTGEIRTIRRLLEKDVTRQRLVILVKDNGQPPLS
ATVSIVLNVVDSVPVSLSDFGDLTLSPQPPSNLALYLIVSLSTISLIFLVAIIVLAGVKC
YKDRETLSGYNLPPFACCCCGGFQPDPPPEVFKKSNLNLQISSAAKVPTNFMEVNGNSSL
SQSYCYKVCLTPESAKSDFMFLKPCSPGSTPRNNEAKSAESSWNAQSRSASVNNGATTPN
ELKQPNTDWTLTKNQNSSIKSYNSINMDGTLMRKAMHADPENYVTSMAPGQYWTWGTQMR
GVKDYKMSPSTSGIPSRPWTPRCTPPPQQQQPSITPNPQPHPQPHPQTHPHPQPHPHPQP
HPQPPPDYHHNVYIPGTPSGFCTLRPTAQRSELDVHNSFSTFGKRRRLQMSPQGEAAIIN
NDLYND
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggatcacattctccccagaggcagctgggtaccggtgactgggctggttgtctgtcta
cttctgtgtgcgtgtgttgtggacctggttcttgcgcaaattcggtactccattcctgaa
gagctggagcacggagcttttgtgggcaacattgccgaagacctgggcttggatgtggcc
aagttgtcagcacgtcggtttcgtatagtctccggcgcaaagaggcagtatttagaagtg
aacttggagaatggaattctcttcgtcaacgaaaagatggacagagaagatctgtgtgaa
cgaagcccgagctgttttttacacctacaagtggttattgaaaacccattagaattgtac
agagtggaagtggagattttagatgtgaatgacaactcccccaatttcccatggagcgag
tttaatcttgacatcacagagtcggctgcgcccggctcctgtttcccgttggagagcgcg
ctggaccaggacgtgggcaccaactctctgcgctcctaccagctaagcgcaaacgagcac
tttgttctgaatatccagacgcgcaatgatgggagcaagtttgctgagcttgtgttggac
accccgctggactgggaacagcagaagaggcacgaaatggttctgactgcctttgacggg
gggtcaccggggcgctctggtacagcactgataactatcacagtgttggactccaacgat
aacgtgcccgtatttgaccgctcagtttaccgggcgagtctggtggagaacacacagagg
gggacgctggtgctgaagctgaacgccacagaccttgatgagggctccaatggagaggtg
acctacgcttttagcgggcacgcacccctcaaggtgcgcgagctgttcagcgttgacccg
tacacgggggaaatccgagtgaagggcattgtggactatgagaaagccagtgtgtatgag
ctgtatgtgcaggcaaaagacaggggaccctcggctgtggctgtgcacagtaaagtgctt
gtagacattctcgatgtgaatgacaacgcgcccgaagtcatcctcacatcagtgtccact
cctgtccaggaagacgcgccaccgggcacggtgatagctgtcatcagtgttatggaccgg
gactcgggagaaaacggaaacgttgactgccaaattccaagcaacgtcccctttcagctc
cattcatcttttaaaaactattatactctggtgacgagcgagtttctggacagggaagcg
gtatccgagtacaacatcaccctcacagccagagacttgggctctcctccactatccacc
aggaaaaccatgcttgttcaagtgtctgacattaatgacaaccccccgcggttctctcaa
ccttcatacacagtgtatgtgaccgagaataatgccccgggcgcatccatttgctctgta
actgcattcgaccccgattccaaccagaacgcctatctgtcttattctattctcgagggt
cagattcagggcatgcccgtgtccacttatgtctccatcaactctgacaacggtaatatc
tacgcactgcgctctttcgattatgaacaacttagaaactttcagattctggtgcaggcg
caggacgctggtttccctcctctcgccaataatatcacagtcaacgtctttgtcttggac
cagaacgacaatgcacctgttatcgtgtccccgcttcccaaaaacggcaccgtggccaca
gaggtggttccgcggttagtagacgctggctatctggttaccaaaataacagcgctggac
gcggacgcagggcagaactcgcgactgtcctatcaggtgctgcacgctacggacccgggg
ctgttcagcgtggctctgtacaccggcgaaatcaggactattcgccggctcctggaaaaa
gatgtaacaagacaaagactggtaatattagtcaaggacaacggacagccgccgctctct
gccactgtctccattgtcctcaacgtggtcgacagcgtgcccgtgtccctgtcagatttc
ggagacctcacgctcagcccacagcccccctcaaacctcgctctatatttaatcgtgtca
ctgagcacaatatctttaatattccttgtggctataattgtgctcgcgggagtcaagtgc
tacaaggacagggagaccctcagcgggtacaacctccccccgttcgcctgctgctgttgt
ggcgggtttcagcccgatccacctccggaggtgttcaagaaatccaacctcaacctgcag
atttcatccgcggccaaagtgcccacgaactttatggaggtgaatggaaacagcagtctc
tcccagtcatattgttataaagtgtgcctgactcccgaatctgccaaaagtgacttcatg
tttttgaagccgtgcagccccggcagcacgccgaggaacaacgaggcgaagagcgcagaa
agctcgtggaacgcgcaaagccggagcgcatctgtgaacaatggagcaactactccaaac
gagctgaagcagccaaatacagactggactcttacgaaaaatcagaactcctccattaaa
agttataactccatcaacatggacggcaccctcatgcgtaaggccatgcatgctgaccca
gaaaactacgtcacatccatggcacctggacagtactggacctggggtactcagatgaga
ggggtgaaagactataagatgtctccttcgaccagtgggatcccctctcgcccctggacc
cctcggtgcacacctcctccccaacagcagcagccatctatcacacccaaccctcaacct
caccctcaaccacaccctcagacccaccctcaccctcaaccacacccacacccacaacca
cacccacaaccaccacctgactatcaccacaatgtgtacatccctgggacaccatcaggc
ttttgcaccctgaggcccacagcacagcgaagcgagctggatgtccacaattcgttctcc
acctttggcaagaggcgacgtcttcagatgtccccccagggagaggctgccattataaat
aatgatctgtacaatgactga
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