Pseudoliparis swirei (Mariana hadal snailfish): 130209583
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Entry
130209583 CDS
T09868
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03013
Nucleocytoplasmic transport
pswi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130209583 (upf3b)
03015 mRNA surveillance pathway
130209583 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130209583 (upf3b)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130209583 (upf3b)
mRNA cycle factors
P-body specific factors
130209583 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
130209583
NCBI-ProteinID:
XP_056295307
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All DBs
Position
19:19532753..19536315
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AA seq
456 aa
AA seq
DB search
MKEDKENARPKERKFELNCEDGEKTEKSRERKEAMTKIVIRRLPPSLTREELEEQLQPLP
EVDYFEFFSNDASLFPHLFARAYINFKNQEDIVLFRDRFDGYVFIDSKGQEYPAIVEFAP
FQKTAKKKMKRKDAKCGTIDEDPDYKKFLEFYNGDDDKLASTPETLLEEIEAKSKELVAK
KTTPLLDFLKNKQRIREEKKEERRRRELERKRVRDEERRKWREEERRKRKDTEKMKRNEK
PLEKDKDQVKEEPKIKLLKKPDRSDDCDSEKSKEKAKKPDRPNKDDRSMGVADHKRRPHI
ENKEDRGRKADEEGRKEFRERDTERDRERERERLQREKERIRRQDENRRRRRDRQDGENL
CRKREEDVKKDKDRGKEKKKGENIGDSTHSERPERPNKDYKKEESNKRDRLRNKDRPAIQ
LYQPGGRSRNRDGAESNSADRKPDTENENVADKGDD
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagacaaggaaaacgctcggccgaaagagcgaaaatttgaactaaactgtgaa
gatggagaaaagacggagaagtctagggaaaggaaagaggccatgacaaagattgtgatc
agacggttgccaccaagtctgaccagggaggagctggaggaacagttgcaacctctccca
gaggtggactactttgagtttttctccaatgacgccagcctttttcctcatctcttcgca
agggcatacatcaattttaaaaatcaagaggatatagttcttttcagagatcgatttgat
ggatatgtgttcattgacagcaaaggacaggagtatcctgccatcgtggagttcgcacct
tttcaaaagactgccaagaaaaaaatgaagagaaaggatgcaaaatgtggaacaattgat
gaagatccggattacaagaagtttcttgaattttacaacggtgatgatgacaagttggca
tcaacaccagagacactgttggaagagattgaggcaaaatcaaaggaacttgtagctaaa
aaaacaactcctctgcttgacttcttgaagaataaacagagaatcagggaggaaaagaaa
gaagagagaagaaggagggagcttgaacgcaagcgcgtgcgtgacgaggagcgtcgtaag
tggagggaggaggagagaaggaagcgcaaagacacagagaagatgaagagaaatgagaaa
cccctggaaaaagacaaggaccaagttaaagaagaaccaaagattaagctcctgaaaaag
ccagacagaagtgatgattgtgattctgagaagtccaaggaaaaggccaagaagccagac
aggccaaataaagacgacagatccatgggggtggcagatcataagaggcgtccacacatt
gaaaataaggaggaccgaggaaggaaagcggacgaagaggggaggaaggagtttagggag
cgtgacacagagcgcgaccgagagcgggagagggagcggctgcagagagagaaggagcgt
atcaggcgacaggacgaaaatcggcggagaaggcgagatcgtcaggatggagagaactta
tgcagaaagagggaggaggatgttaaaaaagacaaagatcgtggcaaggagaagaaaaag
ggtgaaaacattggagactctactcactctgagaggccagagaggccgaacaaagactac
aagaaggaggaaagtaataaaagagaccgtctacgaaataaggaccggcctgcgattcag
ctttaccagccagggggcagaagccgcaatcgagatggagcggaatccaactctgccgac
agaaagccagatactgagaatgagaacgtggctgacaaaggagacgattga
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