Pseudoliparis swirei (Mariana hadal snailfish): 130209601
Help
Entry
130209601 CDS
T09868
Symbol
fmr1
Name
(RefSeq) LOW QUALITY PROTEIN: synaptic functional regulator FMR1
KO
K15516
fragile X mental retardation protein
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130209601 (fmr1)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130209601 (fmr1)
Factors involved in mRNA localization
Other mRNA localization factors
130209601 (fmr1)
mRNA cycle factors
Stress granule specific factors
130209601 (fmr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
KH_9
Tudor_FRX1
FXMR_C2
KH_1
Agenet
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
130209601
NCBI-ProteinID:
XP_056295332
LinkDB
All DBs
Position
19:complement(5413477..5428975)
Genome browser
AA seq
617 aa
AA seq
DB search
MDELVVEVRGTSGAFYKAFVKDVLEGAVTVAFENNWQPERQITFQDVRFPPPTGPCKEIN
EGDEVEVYSRANDKEPCGWWLAKVRMVKGEFYVIEYAACDATLNEIVTLERLRAVNPNKP
ATKATFIKIRLEVPEDLRQMCSKESAHKDFKKAVGAFNVIYDSEKKQLDILSVNEVTTKR
ANMMSDMHFRSLRTKLSLMLRNDEANRQLENSRQLASRFHEQFAVRDDLMGLAIGTHGAN
IQQARKVPGVTNIDLDEETCTFHIYGEDQDAVRIARCFLEFSEDIIKVPRGLVGKVIGKN
GKLIQEVVDKSGVVRVRIEPENDKKPSEAAAAAEGMVPFVFVGTKESISNATVLLDYHLN
YLKEVDLLRLERLQIDEQLRQIGGGGGGGGTGPRNLKDKTFVFDNGMGMGMGMGMGSGGA
GGGGGIGGGGGGKPYGGRGGRGGRGQRGAGGAAFASGTNSEASNASETESDHKDELRDWS
LAPTEELLTGGGTMPRRTDGRRRAGGXGLRGRGGRGRGGGGGYKGDDMQWSDPRPRHVRD
PKTRAPEDNLQIRVDGNNERSVQHSSGGRGGGGPPAVGAVGGGGVGDDPPRQHQRPIRER
GMKKDKQDAPPLVNGVS
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggacgaactcgtcgtggaagtgagggggacgagcggggccttttataaggccttcgtg
aaggacgtcctcgaaggagcggtcaccgtggcgttcgagaacaactggcagccggagcgt
cagatcacattccaggatgtgcggtttcctcccccgacgggcccctgcaaggagatcaac
gagggcgacgaggtcgaggtatattccagagctaatgacaaggagccatgtggatggtgg
ctggccaaagttcgcatggtcaaaggagagttttacgtaatagagtacgccgcgtgcgac
gctacgctaaatgagatcgtgacgctggagcggttgcgggcggtcaaccccaacaaaccg
gccaccaaagccaccttcatcaagatccgactggaagtacccgaggatctacggcagatg
tgctccaaggaatcggcgcacaaagacttcaaaaaagccgtgggagcgttcaacgtcatc
tacgactcggagaaaaagcagctggacattttgtctgtgaacgaggtcacgacgaagcgc
gccaacatgatgagtgacatgcacttcaggagcctccgcaccaaactgtcgctcatgctg
cggaacgacgaggccaacaggcaactggagaattcccggcagctggcgtcgcggtttcat
gaacagtttgccgttcgggacgacctcatgggtctggccatcgggacccacggggccaac
attcagcaggcccgcaaagtccccggggtcaccaacatagacctggacgaggagacgtgc
accttccacatatacggagaggaccaggatgctgtgcgcatcgcgaggtgtttcctggag
ttctctgaagatatcatcaaagttcctcggggcttagtgggcaaggtgatcggcaaaaac
ggcaagctgatccaggaggtggtggataagtccggcgtggtccgggttcgcatcgagccg
gagaacgacaagaagccctcggaggcggcggcggcggccgagggaatggtgccctttgtg
tttgtgggcaccaaggagagcatctccaatgccaccgtgctcctggactatcacctcaac
taccttaaggaggtggatctgcttcgcctggagcgccttcagatcgacgagcagctgagg
cagatcggagggggaggcggaggaggtgggacgggcccgcgcaacctcaaagacaaaacc
ttcgtgttcgataacggcatggggatggggatggggatggggatggggagtgggggagca
ggaggcggcgggggcatcggaggaggaggaggagggaagccctacggaggacggggagga
agaggcggccgggggcaaagaggagcgggaggtgcggctttcgcctcaggcaccaactcg
gaggcgtccaacgcctcggagacggagtcggaccacaaggacgagctcagggattggtcg
ctcgcccccaccgaggagctgctgacgggaggcgggaccatgcccaggcggacagacggg
aggaggagagcaggcggannggggctgcggggacgaggggggagaggaagaggaggagga
ggagggtacaaaggcgacgacatgcagtggagcgacccgcggcctcgccacgtccgagac
cccaagacgagagcgccggaagacaatctgcagatccgtgtggacggtaacaacgagcgc
agcgtgcagcactcctcgggggggagaggcggcggcgggcccccagccgtgggcgccgtg
ggcggaggaggcgttggcgatgacccgcctcgccaacatcagagacccatcagagagcga
gggatgaagaaggacaaacaggacgctcctccgctggtgaacggagtgtcgtag
DBGET
integrated database retrieval system
