Pseudoliparis swirei (Mariana hadal snailfish): 130209787
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Entry
130209787 CDS
T09868
Symbol
rlim
Name
(RefSeq) E3 ubiquitin-protein ligase RLIM
KO
K16271
E3 ubiquitin-protein ligase RLIM [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130209787 (rlim)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130209787 (rlim)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130209787 (rlim)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
Prok-RING_4
zf-RING_16
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
130209787
NCBI-ProteinID:
XP_056295600
LinkDB
All DBs
Position
19:complement(11833267..11844647)
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AA seq
704 aa
AA seq
DB search
MDGSDSLEQSGSNQPESQRRRQLDRLDREEAFYQFVNNLSDDDYRLMRDNNLLGTPGEVT
EDELFSRLQQIKDGPEQQNNSTSAPSTESVEDPVEPPENSEDPANGDSLLDWLNTVRRTG
NTTRTGHRGNQSWRAVSQTNPNSGDFRFSLEISVNRNLAEQQAAAEGEQESQESPEGQEV
VVNADPLVANADALVANADALVANADALVATADALVATADALVATADALVAEPPVSSAEP
LVSSAEPQVPMETEVVEEPVVEELAVIVESEPELEEVVSQEIFGEPPRSPAVLSMQPPLS
PSPRRGQRRARSRSPEPRRTRARTARSRSPLNLDQQDGFRNPNNAHSSQVLNSATNTPLE
PQVEGSSRTRQHVLSRQSTADTDVQPSRAGAETVPEAQNMGSQEGEAAGGEGGAARRRPP
TIMLDLQVRRVRPGEYRQRDSIASRTRSRSQNSNNTFLYESERGGFRRTFSRSERAGVRT
YVSTIRIPIRRISDAGLGEATSMALQSMIRQIMTGFGELGYLMDSDSDSSDSNRAVGTPA
DLAGALNNPDAAPVAVADVDEPPVAAGVRARTAESDINEGLATAPPPSGGRARPRPPISL
EEPSSLPFLRLAHFFLLNDDDEDQPQGLTKEQIDNLSMRNFGESDALKTCSVCITEYAEG
NKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLLSANRESVV
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggatgggtctgacagtttagagcagagtggcagtaaccagccagagtctcagcgcagg
aggcagctggaccgcctggacagggaggaggccttctaccagtttgtcaacaatctgagc
gatgatgactatcgtctcatgagagataacaatcttttgggcaccccaggagaggtcaca
gaggatgagctatttagtagacttcagcaaataaaggatggtccagaacagcagaataac
agtacgagtgcccccagcaccgaaagtgtagaagatccagttgaaccaccagaaaactct
gaggatcctgccaatggagatagtctcctagactggctgaacacagtaaggcgcacaggc
aacaccactagaactggtcatcgtggaaaccagtcatggcgggccgtaagccagaccaac
ccgaacagtggtgattttcgcttcagcctggaaatcagtgtgaatcgcaacctggctgaa
cagcaggcagctgctgaaggggagcaggagtctcaagagtctccagagggtcaagaagtg
gtggtgaatgctgatccactggtggcaaatgcagatgcactggtggcgaatgcagatgcg
ctggtggcgaatgcggatgcgctggtggcgactgcggatgcgctggtagcgactgcggat
gcgctggtggcgactgcagatgcgctggtagctgaaccaccggtgtctagtgctgaacca
ctggtgtctagtgctgagccacaggtgcccatggagacggaagtggttgaagaaccagtt
gtagaggaattggctgtcatagtggaatcagagcctgaattagaagaagttgtttcacaa
gagatttttggagaaccacccaggtcacctgctgtcctatcgatgcagccaccactttct
ccttctccacgcagaggacaaaggagagctcgcagccgtagtccagaaccacgcaggact
agagcccgtactgccaggagccgctcccctctcaacctggatcagcaggatggttttcgt
aatccaaataatgctcacagctctcaagtactcaactctgccaccaatacaccccttgag
cctcaagtggagggcagttctcggactcgacaacatgttctttctaggcaaagcactgct
gacactgatgttcagccatctagggctggtgcagaaacggtcccagaggcccaaaatatg
ggatctcaggaaggagaagctgctgggggcgaagggggcgcagcaaggcgccgcccccct
actattatgcttgatcttcaggtgcgccgtgtgcgtccaggcgaatatcgtcagagagac
agcattgctagccgaacccgctcgcgctcccagaactcaaacaacacatttctttatgag
agtgagcgtggtggatttcgtaggactttctctcgctctgagcgtgctggcgtgaggaca
tacgtcagcactattcgcatccctattcgaagaatctctgatgccggtttgggagaggca
acctcaatggctctccaatcaatgattaggcagataatgacaggttttggtgaactcggc
tacctcatggattcagactctgattcttcagattcaaaccgtgcagttggcacacctgca
gatctggctggagccctcaacaacccagacgctgctcctgttgctgttgctgatgttgat
gaaccacctgtggctgcaggagtcagagcaaggacagctgaatctgatattaatgagggc
cttgccactgctccacctccctctgggggcagggctcgacctagaccacctatcagcctg
gaggagcccagctcattgcccttcctacgacttgcccactttttcctcctaaatgatgat
gacgaggaccagccccaagggctgaccaaggagcagattgacaacctctcaatgcgcaac
tttggtgaaagtgatgccttgaagacttgcagtgtatgcataaccgaatatgcagaaggt
aacaagctacgtaagctgccctgctctcacgagtatcatgtgcactgcatcgatcgctgg
ctctccgagaactcaacttgtcccatctgccgcagggctgttttgctatcggccaaccgg
gagagtgtggtgtag
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