Pseudoliparis swirei (Mariana hadal snailfish): 130209824
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Entry
130209824 CDS
T09868
Symbol
rapgef2b
Name
(RefSeq) rap guanine nucleotide exchange factor 2 isoform X1
KO
K08018
Rap guanine nucleotide exchange factor 2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04010
MAPK signaling pathway
pswi04517
IgSF CAM signaling
pswi04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
130209824 (rapgef2b)
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
130209824 (rapgef2b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
130209824 (rapgef2b)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RasGEF
PDZ
RasGEF_N
cNMP_binding
RA
PDZ_6
RA_2
PDZ_2
Motif
Other DBs
NCBI-GeneID:
130209824
NCBI-ProteinID:
XP_056295670
LinkDB
All DBs
Position
19:24198871..24308520
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AA seq
1655 aa
AA seq
DB search
MASYVDNSFRQAVMMDPAERKQQDLEIVYSYLHGMEALSNLREHQLRMMCETVRYERHEA
NEVLYYPDDVGSCWYILLSGSVFIKESMFLPRSSFGKRSAGSLRRGCECIVLEPSEMIVV
DYMDENEEYFQRQASHRQSRRRFRKINQKGERQTIIDTVDPYPTGKPPIDRGYHTLPADF
SRLHLADGLHPQVTHVSSSHSGCSITSDSGSSSLSDIYQATENEPGDMDLSGLPETAVDS
EEDDDEEDMERASDPLMSRDIVRDCLEKDPMDRTDDDIEQLLEFMHQLPAFANMTMSVRR
ELCAVMVFAVVERAGTIVLNDGEELDSWSVILNGSVEVTYPDGRAEILCMGNSFGVSPTM
EKEYMKGVMKTKVDDCQFVCIAQQDYCCILNQVEKNMQKVEEEGEIVMVKEHRELDRTGT
RKGHIVIKGTPERLTMHLVEEHSVVDPTYIEDFLLTYRTFLSSPMVVGKKLLEWFHDPSL
RDKVTRVVLLWVNNHFNDFEGDGPMTNFLEEFESNLEREKMCGHLRLLNIACAAKAKPRL
VTLTKPSRDSPLAFSLLGGQEKGFRIFLDAVEPGSKAAEVGLKRGDQILEVNGQNFENVQ
LIKANEILKNNTHLSITVKTNLLVFKELLTRPDHDADGEEEHDRKNGAPHLPKIGDIKKA
SRYSIPDLAVDVEQVMGLEKVSKKAKSNSVGGRNKLKKIFDKTLTSILPPKPYNDVCVGQ
SQDDSIVGMKQSKQIAPALPVSGNLSSSNPDLLQSHHRILDFNNQPAPVTPKMSDQVLRV
FKADQQSRYIMIGKDTTAKEVVAQAIREFALTAAPEAHSLCEVSVTPEGVIKQRRLPDQL
SKLADRIQLSGRYYLKSNMETETLCSDDDAQDLLREGQISLLQLSTVEVATQLSMRAFEL
FCAIEPTEYIDDLFKLRSKTGSFSLKRFEEAINHETFWVATEVLREPNQIKRMKTIKHFI
KIALHCRECKNFNSMFAIISGLNLAPISRLRGTWEKLPSKYEKLFVDLQDLFDPSRNMAK
YRNVLNNQNLQPPIIPLFPVIKKDLTFLHEGNDSKVDGLVNFEKLRMIAKEIRHVGRMAS
VNMDPALMFRTRKKKWRSLGSLSQGSANAAVLDVTGTGGHKKRVRRSSFLNAKKLYEDAQ
MARKVKQYLSNLSLETNEESLQTLSVQCEPSISTLPKNAGGKRPDTSPVVSRAASQQRGQ
LAKGSQALQVPAVALYPSRKKVPVKDLPPFGTSSPHSLKKILSLSEEGNERHRRPPEDTV
SNASSQLSSPPISPQSSPKKGYNRVGDAYSDSGHSEISSRSSLVSNSSFDMAQDERRLRH
SGGVGESHSGGQRLERRAATDPDQYSLGSYSSMQDCRGIYSGCPPVLSSPSSEELTQDQG
DRVSLDAADSGRGSWTSCSSGSHDNIQTMQQGRSWETLAFGGGGGGGGGGGGGIGGLPPS
GQEALIGGHAALWAAQARGSWASASSSSSSAAYWGEDSEGDTGTIKRRGGKDVSADPETS
SITSTGSEEAKQLGRPAPSPITTGGKGVLTRKESRYREPPPTPPGYTALTISGLAEGQHP
APCVPAAIATAAAPPPHTGRRPPDYTTALQRSRMVTQSPDSLRAHQGAKQRAGGLHRTRS
PADEREAEEEEEGESSELVALRKPKARHTPETPRP
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttacgtggataacagctttcggcaggctgtgatgatggacccggctgagagg
aagcaacaggacctggagatcgtgtactcgtacctccacggcatggaggcgctgtccaac
ctgcgagagcaccagctcaggatgatgtgcgagacggttcgttatgagagacacgaggcc
aacgaagtgctgtactaccccgacgacgtcggcagctgctggtacatcctgttgtccggc
tccgtcttcatcaaggagtccatgttcctgcccagaagcagtttcgggaagcggtccgcc
ggcagcctgcgacgtggatgcgagtgcatcgtcctggaaccctcggagatgattgtggtg
gactatatggatgaaaatgaggagtacttccagcggcaagcctcgcacagacagtcccgc
cggcgctttcgcaagatcaaccagaaaggggagcggcagacgatcatcgacaccgtggat
ccgtaccccaccgggaagccgcccatagaccggggataccacacgctccccgcagacttc
agcagacttcacctggccgacggcttgcacccacaggtgacccacgtctcctccagccac
tcaggatgtagtatcaccagcgactctggaagcagcagcctgtcagacatttatcaggcc
acagaaaacgaacccggcgacatggacctgagcggcttgccggagaccgccgtcgactcc
gaggaggacgacgacgaggaggacatggagcgagcgtccgaccccctcatgagccgggac
atcgtgcgcgactgcctggagaaggaccccatggaccggaccgacgatgacatagagcaa
ctactggagttcatgcatcagctgccggcgttcgccaacatgacgatgtcagtgaggagg
gaactctgcgccgtcatggtcttcgccgtggtggagcgcgccggcaccatcgtcctcaac
gacggcgaggagctggactcgtggtccgtgatcctgaacggctcggtggaggtgacgtac
cccgacggccgggcagagatcctgtgcatggggaacagtttcggggtgtcgccgaccatg
gagaaggaatacatgaagggcgtgatgaagacgaaggtggacgactgccagttcgtgtgc
atcgcccagcaggactactgctgcatcctcaaccaggtggagaagaacatgcagaaggtg
gaggaggagggggagatcgtcatggtgaaggaacaccgcgagctggaccgcaccggcacc
aggaagggacacatcgtcatcaagggcacaccggagcggctcaccatgcacctggtggag
gagcactcggtggtggaccccacctacatcgaggacttcctgttgacctacaggaccttc
ctctccagccccatggtcgtgggcaagaagctcctggagtggttccacgaccccagcctc
agggacaaggttacacgggtggtcttgctgtgggtaaacaatcacttcaacgactttgaa
ggcgacggccccatgacgaacttcctggaggagtttgaaagcaacctggagagagaaaaa
atgtgcggccacctcagactgttgaacatagcgtgcgccgctaaagccaagccgcggctg
gtgacgctgaccaagccgtccagggactccccgctggccttcagcctcctcgggggccag
gagaaagggttccgcatcttcctcgacgccgtggagcccgggagcaaggcggcggaagtc
ggcctcaagcgcggcgatcagatcttggaggtcaacgggcaaaactttgagaacgtccag
ctcatcaaagccaacgagattctgaagaacaacacccacttgtccataactgtgaaaaca
aaccttttagtgttcaaggagctgctgaccaggccggaccacgacgcggacggcgaggag
gagcacgaccggaagaacggcgcgccccacctcccgaagatcggcgacatcaagaaggcc
agccgctactccatccccgacctggcggtggacgtggagcaggtgatgggcctggagaag
gtcagcaagaaggccaagagcaactcggtgggaggacgcaacaagctgaagaagatcttc
gacaagacgctcaccagcatcctgccgcccaaaccctacaatgacgtttgcgtgggccaa
tcgcaggacgacagcatcgtggggatgaagcagtccaagcagatcgccccggcgctgccc
gtcagcggcaacctgtcgtcgtcgaaccccgacctgctgcagtctcaccaccgcatcctc
gacttcaacaaccagcctgccccggtcacaccgaaaatgtcggaccaggtgctacgagtc
tttaaggcggaccagcagtcccggtacatcatgatcgggaaggacacgacggcgaaggag
gtggtggcccaggccatcagggagttcgccctgacggcggcgccggaggcgcattctctg
tgcgaggtgtccgtcaccccggagggcgtcatcaagcagaggcggctaccggaccagctg
tcgaagctagccgacaggatccagctgagtggcagatactacctgaagagcaacatggag
acggagacgctgtgctccgacgacgacgcccaggacctcctgcgggagggccagatctcc
ctgctgcagctcagcaccgtggaggtggccacgcagctctccatgcgcgccttcgagctg
ttctgcgccatcgagcccaccgagtacatcgacgacctcttcaagctgcgctccaagacg
ggctccttcagcctgaagcgcttcgaggaggccatcaaccacgagaccttctgggtggcc
acggaggtgctgcgcgagcccaaccagatcaagcgcatgaagaccatcaagcacttcatc
aagatcgccctgcactgccgcgagtgcaagaacttcaactccatgttcgccatcatcagt
ggtctgaacctggctccgatctccagactgaggggaacgtgggagaagctacccagcaag
tacgagaagctgttcgtggacctgcaggacctcttcgacccctccaggaacatggccaag
tacaggaatgtgctcaacaaccagaacctgcagccgccgatcatccccctgttccccgtc
atcaagaaggacctcaccttcctccatgaaggcaacgactccaaagtggacggcctggtg
aactttgagaagctgcggatgattgccaaagagattcgccacgtgggtcgcatggcgtcc
gtcaacatggacccggccctcatgttccggacccggaagaagaaatggaggagtttaggg
tcgctgagccagggcagcgccaacgcggcggtgctcgacgtcacgggcaccggcggccac
aagaagcgcgtgcgccgcagctccttcctgaacgccaagaagctctacgaggacgcccag
atggcccgcaaggtcaagcagtacctgtccaacctcagcctggagaccaacgaggagagt
ctgcagacgctctccgtgcagtgcgagccctccatcagcacactgcccaagaatgccggt
gggaagcgacccgacacctccccggtggtgtccagagcggccagccaacagaggggccag
ctggccaaggggagccaggccctccaggtcccggccgtggccctctacccatcccggaag
aaagtgcccgtcaaagatcttcccccattcggcaccagttcccctcattctctgaagaag
atcctgtctctgtcggaggaggggaacgagcggcaccgccggccgccagaggacaccgtg
tccaacgcctcctcccagctctcctcccctcccatctccccacagagctcacccaagaag
ggttacaaccgggtgggtgacgcctactcggactccggtcacagtgagatctcctcccgc
tccagcctggtcagtaactcctccttcgacatggcccaggacgagaggagactccgtcac
tccggaggagtcggggagtcgcacagcggcggccagcggctggagcgaagagccgccacc
gaccccgaccagtacagcctcgggtcgtattcgtcgatgcaggactgccggggcatctac
tccggctgcccgccggtgctctcctcgcccagctccgaggagctgactcaggatcagggc
gaccgcgtttcactggacgccgcagacagcggccgcggctcctggacttcctgctcctcc
ggctcccacgacaacatccagaccatgcagcagggccgcagctgggagactctggctttc
ggcggaggaggaggtggaggaggtggaggaggaggcggcatcgggggactcccacccagc
ggacaggaggccttaatagggggacacgccgcactgtgggcggcccaggccagggggagc
tgggcgtcggccagctcctcctcctcctcggcggcgtactggggagaggactctgagggc
gacacgggcaccatcaagaggagaggcgggaaggacgtcagcgccgacccggagacgagc
agcatcacctccaccgggtcggaggaggccaagcagctcggccggcccgccccgtcgccc
atcaccaccgggggcaaaggcgtcctcacgcggaaagagagccgctaccgcgagcccccc
ccgaccccccccggctacaccgccctgaccatctccggcctggccgaggggcagcacccg
gcgccgtgcgttcccgcggcgatcgccacggcggcggcgccccccccacacaccggccgc
cggccgccggactacaccacggcgctgcagcgctcgcgcatggtcacccagtcgcccgac
tccctccgggcccaccagggggccaagcagcgggccggcggcctccaccgcacgcgctcg
ccggccgacgagcgagaggccgaggaggaagaggagggtgagtcttccgaactagtcgct
ctgaggaagccaaaggcacggcatacacccgagactcccagaccgtga
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