Pseudoliparis swirei (Mariana hadal snailfish): 130209827
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Entry
130209827 CDS
T09868
Symbol
ssrp1a
Name
(RefSeq) FACT complex subunit SSRP1a
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130209827 (ssrp1a)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130209827 (ssrp1a)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
130209827 (ssrp1a)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
130209827 (ssrp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
SSrecog
POB3_N
HMG_box
HMG_box_2
HMG_WDHD1
SSRP1_C
YABBY
Motif
Other DBs
NCBI-GeneID:
130209827
NCBI-ProteinID:
XP_056295678
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Position
19:15930395..15943018
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AA seq
712 aa
AA seq
DB search
MGDTLEFNDIYQEFKGSWNDGRLRFGKHNVVYKSSKTGKVDNIPAGELNLAQWRRVCLGH
GIKLGTNSGHVHRYDGFRETDFEKIAEFFKSHYKVELTEKDLCVKGWNWGTAKFSGPLLS
FEVNDNTAFEVPLSNVSQCATGKNEVTLEFHQNDDTDVSLMEVRFYIPPAQADERQDPVE
AFADNVLLKADVIQATGDAVCIFKELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV
LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEEDLSLSLNMSEEDVERRFE
GKLSKNMSGSLYEMVSRVMKSLVNRKITVPGNFQGHSGVQCITCSYKASSGLLYPLERGF
IYVHKPPVHLRFEEISSVNFARGTTTTRSFDFEIETKQGNQFTFSSIEREEYGKLFDFVN
AKKLNIKNRGFKEGMKGKIDEYSDSDEDQHDAYLERMKAEGKIREEGNESEESDGESDES
FNPGEEDDDIAEEYDSNASASDSSDDGDASDNDGSKKPKVKKPKVVKEKKERKRRREKKP
REGPKRPMSAYMLWLNASRERIKSENPGISITEISKKAGEMWRQLGKDDKEEWDTKAGEA
KRQYEKAKKEYKDSVASGGGGAAAPSSSKKESKQSGGKKEEKKRKSAGGDKEKERGGGND
SFKSREFIETSEDSSSDTDRKSKSKRKKASEKEEKEEEEAVSTPASSEADSD
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgggagacacgctggagttcaacgacatttaccaggagttcaaaggctcctggaatgat
gggcggctgcgtttcggcaaacacaacgtggtttataagagcagcaagacggggaaggtg
gacaacatcccggctggagagctcaacctggcccagtggaggcgagtgtgtttaggtcac
ggcatcaagctgggcaccaactcgggacatgtccacagatatgacggcttcagggagacg
gactttgagaagatcgctgagttttttaagtctcactacaaggtggagctgacggagaag
gacttgtgtgttaaggggtggaactggggaacagccaagttctcaggaccactgttatcg
tttgaagtaaatgacaatacagctttcgaggtcccgctgtccaacgtgtcccaatgcgct
acggggaagaacgaagtcactctggagtttcaccagaacgacgacaccgatgtctccctc
atggaggtccgattctacatccctcccgcccaggctgatgaacggcaagaccctgtggag
gcgtttgcagataatgtgttgttgaaggctgatgtgatccaggccacaggagacgctgtg
tgtatcttcaaagagctgcagtgtcttacgcccagaggaagatacgacatccgtatctac
ccgactttccttcacctccatggtaagacgtttgactacaagattccctacaccaccgtg
ctgcgtctattcctgctgccgcacaaggatcagaggcagatgttctttgtgataagtctg
gatcctcccatcaagcagggtcagacgcgttatcactttctcatcctgcttttctccaag
gaagaggacctcagcctctccctcaacatgagcgaggaggatgtggagcgtcgttttgag
ggcaaactcagtaaaaacatgtccgggtctctgtacgagatggtcagcagggtgatgaag
tccctggtcaaccgcaagatcactgtgcccggaaacttccaggggcactctggggttcag
tgcattacctgctcctacaaggcgtcctcaggcctcctctatcctctggagaggggcttc
atctacgtccacaagccccccgtgcatctgcgcttcgaggagatctcctccgtcaacttt
gcccgaggcaccaccacaacgcgctcctttgactttgagatcgagaccaagcagggaaat
cagttcaccttcagcagcattgagagagaagagtacggcaaactgtttgactttgttaac
gccaagaagctcaacatcaagaacagaggattcaaagagggcatgaagggtaaaattgat
gagtacagtgactcagacgaggaccagcatgacgcctacctggagaggatgaaagctgag
ggcaagatccgagaggagggcaacgaaagcgaagaatcggacggcgaaagcgatgagtcg
tttaaccccggagaagaagatgatgatattgctgaagagtacgacagcaatgcgtcggca
agcgacagcagcgacgacggggatgcaagcgacaatgacggctcaaagaagccgaaggtc
aagaaacctaaagtggtcaaggagaaaaaagaaaggaaacgacgtagagagaagaagccg
agagaaggacccaagaggccgatgagcgcctacatgttgtggctgaatgccagccgcgag
cgcatcaagtctgagaaccccggcatctccatcacagagatttccaagaaggccggagag
atgtggagacaactgggcaaagacgacaaggaggagtgggacacaaaggcgggagaggcg
aagaggcagtatgagaaagcaaagaaagagtacaaagatagcgtcgccagtggcggcggc
ggagcagcagcaccatcaagttccaagaaggagagtaaacaatctggaggtaagaaggag
gagaagaagaggaagtctgcgggaggagacaaggaaaaggagcgaggaggaggcaacgac
agctttaagagtcgagagttcatcgagacgagcgaggacagttcgtcagacactgaccgc
aagagcaagtccaagaggaagaaggcatcggagaaagaggagaaagaggaggaagaggct
gtgtccacacctgccagctcagaggcagactctgactaa
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