Pseudoliparis swirei (Mariana hadal snailfish): 130209921
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Entry
130209921 CDS
T09868
Symbol
pcdh10b
Name
(RefSeq) protocadherin-10b isoform X1
KO
K16499
protocadherin delta 2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130209921 (pcdh10b)
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Protocadherins
130209921 (pcdh10b)
BRITE hierarchy
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
TMEM154
Motif
Other DBs
NCBI-GeneID:
130209921
NCBI-ProteinID:
XP_056295818
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All DBs
Position
19:8062361..8083468
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AA seq
1029 aa
AA seq
DB search
MIVLLIVLCIADGVLSQISYSVSEEADHGTLVGNIAEDLGLDLTKLASRRFQVVPSSRTP
YLEVNLENGVLFVGEKIDREHICRQSASCQLNMEVFLENPLELFRVEIEVVDINDNPPSF
PETDITVEISESATPGTRFPLESAFDPDVGSNALRTYDITTNNYFYLDVQTQTDGSKFAE
LVLEKSLDREQQAAHRYVLTAVDGGQPPRTGTALLVVKVMDSNDNVPVFDQPVYTVSLSE
NAPVGMLVIQLNATDLDEGQNGDVVYSFSNHISSRVKDLFSIDPRTGRIEVRAEVDFEES
SLYQIFVQAKDMGPNAVPAHCKVLVKVSDLNDNAPEITFSTVTESVSEKAAPGTVIALLS
VTDRDAEENGQMHVEILGDVPFKLKTSFRNYFTIVTDGPLNREQADSYSVTVVARDKGTP
SLAASKSIRVQVSDENDNAPTFAQAIYDVYVTENNVPGAYIHAVTAVDPDVGQNALISYS
ILECDIQGMSVKTYVSINEETGYLYALRSFDYEQLKDFTFMVQAKDAGTPELSSNATLKV
IIVDQNDNAPVVLAPLGKNGTAKEPLPRSAEPGYLVTRIVAMDEDDGENARLSYSIQRGN
ENGMFRMDWRTGELRTARRVSVKRDPHQLYDLLIEVRDHGQPPLSSSASVLVVLVDSVVE
GRGARDRGSTAKTKDGTLDLTLILIIALGSVSFIFLLVMIVLAVRCQKDKKLNLYSCLTS
ECCLGCSSCCSRQGRARKKKLNKSDIMLVQSAGSVGGAGTAQVPVEESGSFGSHHQNQNY
CYQVCLTPESAKTDLMFLKPRSPSRSTDTDHNPCGAIVTGYTDQQPDIISNGSILSNETK
HQRAELSYLVDRPRRVNSSAFQEADMVSSKDSGHGDSEQGDSDHDATNRGHSSGADLFSN
CTEECKALGHSDRCWMPSFVASDGRQGPDYRSNLHVPGMDSVPDTEVFEPPEQTADRSFS
TFGKETPVSQQHLHLHLHQNHHHQQHHQLLKNHHLSHQQSSLEREESDVFPPISRAPYKP
AYLTGKRVC
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgattgtgcttttgattgtcctgtgcatcgcggatggagtgctctctcagataagctac
tctgtgtctgaggaggcagaccatggcaccttggtggggaatatcgccgaggacctggga
ctggaccttactaaactggcctcacgccggttccaagtggtgcccagctctcgcacgccg
tacctggaggtgaacctggagaacggcgtcctgttcgtgggcgaaaaaatcgaccgggag
catatctgcaggcagagcgccagctgccagctcaacatggaggtgttcctggagaacccg
ctggagctgtttcgggtcgagatcgaggtggtggacattaacgacaacccgcccagcttc
ccggagacggacatcacggtggagatctcggagagcgccactccgggcacccgtttcccc
ctagagagcgcgttcgacccggacgtgggctctaacgctctgcgcacttacgatatcacc
accaacaactacttttacctggatgtgcagacccaaacggacggaagcaagttcgcagag
ctggtcctggaaaagtcgctggaccgggagcagcaggcggcgcacaggtacgtgctgaca
gcggtggacgggggtcagcctccccggactggcactgcgctgctcgtcgtcaaagtgatg
gactctaatgataacgtgccggtgtttgaccagcccgtctacacggtgagcctctcggag
aacgcaccggtgggcatgctggtcatacagctgaacgccaccgacctggacgagggacag
aatggggatgtcgtgtattccttcagtaaccacatatccagccgcgtaaaggacctgttc
agcatcgacccgcgcaccgggcgcatcgaggtgcgcgcagaggtggatttcgaggagagc
agcctctatcagatcttcgtccaggccaaggatatggggccgaacgccgtgcccgcgcac
tgcaaagtgctggtcaaagtcagcgacctgaacgacaacgcaccggagatcaccttcagc
acagtcaccgagtccgtgagcgaaaaggctgctcccggcaccgtcatcgcgctgctgagc
gtgaccgaccgggacgcggaggagaacggccagatgcacgtggagatcctcggcgacgtg
ccgtttaaattgaaaacgtcctttcggaattatttcaccatagtgaccgacggcccgctg
aaccgggagcaggcggactcctactccgtcaccgtggtcgcgcgggataaagggacgccg
tcgctcgctgccagcaagtccatccgagtacaggtgtcggacgagaacgacaacgcgccc
acgtttgcgcaggccatctatgatgtgtatgtgaccgagaacaacgtgccgggcgcgtac
atacacgccgtgacggctgtggacccggacgtcgggcagaacgcgctcatcagctactcc
atattagagtgtgacatccagggcatgtcggtcaaaacctacgtgtccatcaacgaggag
accggctacctttacgcgctccggtcctttgattatgagcagttgaaggatttcactttt
atggtccaggccaaagacgcgggcaccccggagctctcctccaacgccacgctgaaagtc
atcatcgtggaccagaacgacaacgcacccgttgtgctggccccactggggaaaaacggc
accgccaaggagcccctgccgcgctccgccgagccgggctacctggtgacgcgcatcgtg
gccatggacgaggacgacggcgagaacgcgcggctgtcctacagcatccagagggggaac
gagaacggcatgttccggatggactggaggacgggcgagctgcgcacggcgcggcgcgtg
tcggtcaagcgcgacccgcaccagctgtacgacctgctgatcgaggtgagggaccacggc
cagccgccgctgtcctccagcgccagcgtgctggtggtgctggtagacagcgtggtcgag
ggccgaggcgccagggaccgggggagcactgccaagaccaaagacgggaccctggacctc
acgctcatcctcatcatcgccctgggctctgtctccttcatcttcctcctggtcatgatc
gtgctggccgtgcgctgccagaaggacaaaaagctcaacttgtactcctgcctgaccagc
gagtgctgcctgggctgcagctcgtgctgctcgcgacagggccgcgcgcgcaagaaaaag
ctcaacaagtcggatatcatgctggtgcagagcgccggtagcgtcggcggggccggcacg
gctcaggtccccgtggaggagtcggggagcttcggctctcaccaccaaaaccagaactat
tgctaccaggtatgtctgactccggagtccgccaaaaccgacctcatgttcctaaagccg
cgtagtccgtctaggagcacagacaccgatcacaacccgtgcggggccatagtgacaggg
tacacagaccagcagcccgacatcatatcaaacggcagcattttgtcaaacgagaccaaa
caccagcgagctgaactcagctacctggtggacaggccgagacgtgtcaacagctcggcg
ttccaggaggcggacatggtgagctccaaagacagcggccacggagacagcgagcaggga
gacagcgaccacgacgccaccaaccgaggccattcctctggcgccgatctcttctccaac
tgcacggaggagtgcaaggctctgggccactccgaccgctgctggatgcccagcttcgtg
gcctccgacgggcgccagggcccggactaccgcagcaacctgcacgtgccgggcatggac
tcggtcccggacacagaggtatttgaaccccccgagcaaacggccgataggtcattctcc
acctttggcaaggagacgcctgtcagtcaacaacacctccacctccacctccaccaaaac
caccaccaccagcagcaccaccaactcctcaaaaaccatcacctcagccaccagcagagc
tccctagagagggaagagtcggatgtatttccgcccatttcccgagcgccttataagccg
gcttatttgacggggaaaagggtttgctag
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