KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130209930
Entry
130209930         CDS       T09868                                 
Symbol
cul4b
Name
(RefSeq) cullin-4B
  KO
K10609  cullin 4
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03420  Nucleotide excision repair
pswi04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    130209930 (cul4b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    130209930 (cul4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pswi04121]
    130209930 (cul4b)
   03400 DNA repair and recombination proteins [BR:pswi03400]
    130209930 (cul4b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pswi04147]
    130209930 (cul4b)
Ubiquitin system [BR:pswi04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     130209930 (cul4b)
DNA repair and recombination proteins [BR:pswi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      130209930 (cul4b)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      130209930 (cul4b)
Exosome [BR:pswi04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   130209930 (cul4b)
SSDB
Motif
Pfam: Cullin Cullin_AB Cullin_Nedd8 SecA_SW
Other DBs
NCBI-GeneID: 130209930
NCBI-ProteinID: XP_056295831
LinkDB
Position
19:19467027..19476935
AA seq 867 aa
MFPTGLSSPNPPPPPTQEARPAATDVKPDSGNITSPKKRKINGSEREDIADTISSSPPKT
LHSFSSSASSSSSSSPTALHIQKKLRFEDLVDFIGLDVKMAEEAAAAASCSNNKSKAGFL
AGGAGHHANGLTKPAGSGIFSNSKPGAAKKLVIKNFKEKPKLPENYTQETWQKLKEAVEA
IQNSTSIKYNLEELYQAVENLCSHKISAKLYKQLRATCEDHIKAQIIQFREDALDSVLFL
RKIDTCWQDHCRQMIMVRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFYIISDLKVQSKT
IDGILLLIERERNGEAIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQRLMQ
EREVPEYLHHVSKRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLTATLQKGLTHLLD
ENRIQDLSLLYQLFSRVRGGVQVLLQHWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKV
DHVIDACFMKNEKFVNAMKEAFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELEKM
LDKIMIIFRFIYGKDVFEAFYKKDLSKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLE
GMFKDMELSKDIMVQFKQHMQCQNLPGNIELTVNILTMGYWPTYVPMEVHMPPEIVRLQE
IFKTFYLGKHSGRKLQWQSTLGLCVLKAEYKEGKKELQVSLFQTLVLLMFNEGEEFTLEE
IKLATGIEDSELRRTLQSLACGKARVLTKIPKSKDVEDGDKFSCNDDFKHKLFRIKINQI
QMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLMSEVYNQLKFPVKPADL
KKRIESLIDRDYMERDKENPNQYNYMA
NT seq 2604 nt   +upstreamnt  +downstreamnt
atgtttccaacaggtctatcttcccctaaccccccaccaccgccaacccaggaggctaga
cccgcggctactgatgtcaaacccgacagcggtaacatcacatctccgaagaagaggaaa
ataaacggttcagagagggaagacatcgctgacacgatctcgtcttcgcctcccaagacc
ctgcattccttttcttcttccgcctcctcatcttcctcctcgtctcccactgcactgcac
atccagaagaagttgaggtttgaggatctggtggacttcattggactggatgtgaaaatg
gccgaggaggctgccgccgccgcttcgtgctccaataacaaaagcaaagccgggttcctg
gccggtggcgcggggcaccacgcgaacgggctgacgaagcccgcgggctccggcatcttc
tccaacagtaaacccggcgcggccaagaaactagtcatcaagaacttcaaagaaaagccc
aaactgcctgagaactacacacaggagacatggcagaagctgaaggaggcggtggaggcc
atacagaacagcacttcaatcaagtacaatctagaggagctctatcaggctgtcgagaac
ttgtgctcccataagatatctgccaagctttacaaacagctaagggccacgtgtgaagac
cacatcaaggcacaaattattcaattcagagaggatgccctggacagcgtgcttttccta
aggaaaattgacacgtgctggcaagatcactgcagacaaatgatcatggttcggagtata
tttttgtttttggaccgcacctatgttttacaaaattcaatgctgccatcaatctgggac
atgggtctggagctgttcaggttctacatcatcagtgaccttaaggtccagagtaaaacc
atcgacgggattctgctgctcatagagagggagcgaaacggagaggcgatagaccgcagt
ctgctgaggagcctgctgagcatgctctctgatctgcagatttatcaggactcctttgag
caacgctttttggaggaaaccaatcgtctgtatgctgcagagggacagaggctgatgcag
gagagagaggtaccagaatatctccatcatgtcagcaagcgattagaggaggaggccgac
agagtcatcacatatttagaccagagcacacaaaaaccgctcattgctacggtggagaag
cagctgctgggtgaacatctcacagccactctgcaaaaagggctgactcacctgctggac
gagaacagaattcaggatctgtctcttctctatcagctctttagtcgagtgcgaggcggc
gttcaggttctcctacagcactggatagagtacataaaggcttttggaagcacaatcgta
atcaatccagagaaagacaaaacgatggtgcaagagttgctggacttcaaggacaaggtg
gatcacgtcatcgacgcctgcttcatgaagaacgagaagtttgtcaacgccatgaaggag
gctttcgaaacgttcatcaacaaacggccaaataaacccgcagagctcatagcaaagcat
gtggattcaaagctacgggcaggaaacaaagaagcaacagatgaagaactggagaagatg
ctggataagatcatgataatctttagattcatctacggaaaagatgtttttgaggccttt
tacaaaaaggatctgtccaagaggttgctggttggaaagagcgcctctgtggatgctgaa
aaatcgatgttgtcaaagctgaaacatgaatgtggagcagcgttcaccagcaagctggag
gggatgttcaaggatatggagctttctaaagacatcatggtgcagttcaaacagcatatg
cagtgccaaaaccttcctggtaacatcgagctgacggtgaacatcctgacgatgggctac
tggccaacctacgtcccgatggaagtgcacatgcctcctgagatagtgcgactgcaggag
atcttcaagaccttctacctgggcaaacacagcggcaggaagctgcagtggcaatcgaca
ctgggcctttgtgtcttaaaagcggaatataaagagggcaagaaggagctgcaggtgtca
ctcttccaaacacttgtgctgctgatgtttaacgaaggggaggagttcaccctggaggag
atcaaactggcaacaggaatagaagacagtgaactgcgccggactctgcagtcactagct
tgtggaaaagcacgcgtcctcaccaaaatcccaaaaagcaaagatgtggaggacggggac
aagttttcttgcaatgacgacttcaaacacaagctcttcaggataaaaatcaaccagatc
cagatgaaggagacggtggaggagcaagtcagtaccacagaaagggtctttcaggatcgt
cagtatcagattgatgctgccatcgtgcggatcatgaagatgaggaagactctgagccat
aatctcttgatgtctgaagtgtacaaccagctcaagttccctgtcaagcctgctgacttg
aagaagaggatagagtctcttattgaccgggactatatggagcgtgacaaggagaacccc
aaccagtacaactacatggcttag

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