Pseudoliparis swirei (Mariana hadal snailfish): 130210000
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Entry
130210000 CDS
T09868
Symbol
rbm22
Name
(RefSeq) pre-mRNA-splicing factor RBM22
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130210000 (rbm22)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pswi03041
]
130210000 (rbm22)
Spliceosome [BR:
pswi03041
]
Complex B
Other components
Prp19-related factors
130210000 (rbm22)
Complex C
130210000 (rbm22)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
RRM_occluded
Nup35_RRM_2
zf-CCCH_2
zf-CCCH
RRM_3
zf-CCCH_4
RRM_YTH1
zf-CCCH_12
zf-CCCH_PARP12
zf-CCCH_10
Motif
Other DBs
NCBI-GeneID:
130210000
NCBI-ProteinID:
XP_056295956
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Position
19:complement(13494275..13498866)
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AA seq
427 aa
AA seq
DB search
MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
TRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLSVKDEVPKSDVNKEYYTQN
MEREIANTDGTRPVGQLGKAPSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPDDKSISTLYIGGLG
DTVTEGELKSHFYQFGEIRTITIVQRQQCAFIQFATRQSAEMAAEKSFNKLIINGRRLTV
KWGRSQAARGKEGIKEGTSEMGTRLDPVPGLPGALPPPPALDEEAPANYFNLDPSSSPAV
MNIALPLPPGINPPPPGFGPPMFHPMEHMAPPMPPPMSMRPPGQIHYPSQDPQRMGAHAA
HGSRHGE
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtcgctaggatccaatacgtacaatagacagaactgggaagacgcggatttt
ccaattctgtgtcagacatgtttaggagaaaacccttacatccgtatgaccaaggagaag
tatggtaaagaatgcaagatatgtgcgcgaccatttactgtgttcagatggtgtccaggc
acacggatgcgtttcaagaagacggaggtctgtcagacatgcagtaaaatgaagaatgtt
tgtcagacatgtctgctggacctggagtatggtttgccgattcaggtcagagacactggg
ctgtcagtaaaagatgaggttcccaagtcagatgtgaacaaggagtactacacacagaac
atggagagagagatagccaatactgatggcacacggcctgtcggccagttaggtaaagcg
cccagctcgagtgatatgttgctgaaactggcccggaccactccgtactacaagaggaac
cggccacacatctgctccttctgggtgaagggagagtgtaagagaggggaggagtgtccc
tataggcacgagaagcccacagatcctgacgaccctctggccgaccagaacataaaggac
cgttactatggcatcaatgacccagtcgcagacaagctgctgaaacgtgcctcaactatg
ccccgactggacccgccagacgacaagtccatctccaccctctacatcggggggttggga
gataccgtcactgaaggagagctcaagagtcacttttaccagtttggtgagattcgtacc
attaccatcgtccagaggcagcagtgtgccttcatccagtttgccactcgacagtcagct
gaaatggctgcggagaagtccttcaacaaactcatcattaacggacgcaggctcactgtc
aagtggggaaggtctcaggccgcaagagggaaagagggcatcaaagagggcaccagtgag
atgggcaccagacttgatcctgtacctggattgcctggagctcttcctccaccaccagct
ttggatgaagaagctcctgcgaactactttaacctcgacccgagctcctctcctgcagtc
atgaacattgctctgcctctacctccaggcatcaacccgcctcctccaggttttggccct
ccaatgtttcaccccatggaacacatggctccacctatgccccctccaatgagcatgaga
ccacctggtcaaatccactacccctctcaggatcctcagcgcatgggtgcccatgctgca
cacggctctcgtcatggtgaatag
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