Pseudoliparis swirei (Mariana hadal snailfish): 130210098
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Entry
130210098 CDS
T09868
Symbol
aff2
Name
(RefSeq) LOW QUALITY PROTEIN: AF4/FMR2 family member 2
KO
K15194
AF4/FMR2 family member 2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130210098 (aff2)
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
130210098 (aff2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AFF4_CHD
AF-4
AF4_int
Motif
Other DBs
NCBI-GeneID:
130210098
NCBI-ProteinID:
XP_056296054
LinkDB
All DBs
Position
19:complement(5248813..5368363)
Genome browser
AA seq
1533 aa
AA seq
DB search
MVSQSSGVGSQRPEEEGVGEEEQEVQQDEDLFSTGFNLFGEPYKTNKGDALASRVQNTLG
SYEEMKDLLTSHSNQSHLVGIPKGSNNLQTPTTSTTERPAVDPRLFNEALRGGTGGGGGG
GAAEGGGDKRMANASSSSSTTRQPPAAAASASAAATPHPSSQNKSRSSVDWSRAGHAQSA
PQGGGGLAAGPAPAAAGARGKLSLLEEQQMQRHDELFSSLKDELGLKGDSSPSSSSSSSS
SSSSFGRRHASHPSKTLPLPDGGNFRSSAADAGHFKSSTHAENGGHFKLSPFENETSSHL
PTSSSSPLASTSVLTTPTPGLTTPTSGLTTPTFPPGSLSGKPMAIQQKPTAYVRPMDGQD
QVPSDSPQMKPPLAPAEGFNNGQAYGGNAGNAKNKLPKLSLGHTGEVSLPNDSSCVEEIL
REMTHSWPPPLTAIHTPGKADQTKFPIPNKESQHVTSGYNTQKRCTLSANKPAAKPQTAP
QKSMLEDDLKISSDEEEAEQQVSDKPKARGAALSGASGSSSESESSSESDTDESESSSSD
SEYNQTSRTHTPEPEPPSANKWQLDSWLNKVQAQTKPLVPPQPEHGTGSITQGTGTFSPR
SEAPGVGTAAKTKPCVPNITPGPTAQTLDHKETRGTFCPGSREKAKVKLGQKASGEGQRS
KVRMSPGLSSGPEVTTQRRTTTGKKQPRRTERSNSAEDAQSQTWSRTNQQSPVAREKDLL
PPPSLELQTPPRPRSKPPSGKTAPRKEPRSATNSNTSSVTPPAALQQTPAPTPAVSVNQD
KRKHRGPSNKITPKSREFIETDSSSSSSECHSDSEGALKIPAPPPPPAPPPQEKRSAINT
QTLSNTNAPPLPPCPGSAGSLGTPFGSKGLRVKDGGGVTADGSGGINGTACNAPSVGNGT
GSFGASVPDPGGLGGQRKDPVPVSPPPNVGHEVPPSPLRDFQEIQSLWVKVELSLLGRVP
GQGSGERSRSGQQAERDGSAGRDRERQGERTGAAERERQKQRTPKGEKPEEENERLAPDR
ERQGDRDPLTERERPTDREDRDGSGVGERDRTAGKDREKAGQGPGAPDNPAAQEQSHPRL
AGRTEGKHRRQAAGSVAGPTEKHGNKSKRKHKSDHSESSAIGNKKLRLDKDCQLLPSFIS
PTHNHRNGSADSSLNRKQSRRREDKLLPPLLSPLSDDPPPKRICDGGSSLGQEGVATGTQ
PCSTSTSSSTSTSSSSSSHRHRRGEDKASAPATNGSEVDPHGEKPGGDGYHANGQSDSEV
WSEPPMEPAEPRRPRLAFSDTVHSADFYMQEAKRLKHKADALTDKFGKAVNYADGALSFI
DCGNAMERDPLEAKSPYTMYSETVELIRYAMRLKNFTSQSATVAEKKLAVLCNRCLSLLY
LRMFHLKKDHAVKYSRSLMEYFKNSAKSSHQAPSPWRINGKVNGTPSPLSLSPSPAGSGG
AGGGSGGAPGSSGSVAIPQRIHHMAASHVNITNNILRSYEHWETADRLAADSQEFFQELD
SVMEPLSQPSSMTELVRYIRQGLHWLRAEAHLL
NT seq
4602 nt
NT seq
+upstream
nt +downstream
nt
atggtttctcagtcatctggagtcggatcgcagcgccctgaagaggagggagtgggagag
gaggaacaggaggtgcaacaggatgaagacctgttctcgaccggattcaacctgtttggg
gaaccgtacaagacgaataaaggtgacgcgttggccagtcgcgtccagaacacgctcggc
tcctacgaggaaatgaaagacctgttgaccagccactccaaccagagccacttggtggga
atccccaaaggcagcaacaacctgcagaccccgaccacgtccacgacggagaggcccgcc
gtggacccccggcttttcaacgaagccctgagaggagggacgggtggtggtggaggggga
ggagcagcagagggaggcggggacaagaggatggcaaacgcatcttcctcctcttcgacc
acaaggcagccgcccgccgcggccgcgtcggcgagcgccgcggcgaccccgcatccgagt
tcgcaaaataaatcccgaagctccgtggactggtcgagggccggccacgcacagagcgcc
ccccagggggggggaggcctcgctgcggggccggcgccggccgccgcgggcgcgagaggg
aagctgtcgctgctggaggaacagcaaatgcagcggcacgacgagctgttcagctcgctc
aaggacgagctcggcctcaaaggcgactcgagcccttcgtcctcctcttcgtcctcctcc
tcctcgtcctctttcgggagaaggcacgcatcgcacccctccaaaacccttcctcttcca
gatggcggcaatttccgatcttccgccgcggacgccggccatttcaagtcttccactcac
gcggagaacggcggacattttaaactctccccgttcgaaaacgagaccagctcccacctc
cccacgtcctcctcctccccgctggcttccacgtcggttctgacgacgcccacccccggc
ctaaccactcccacgtccgggctgaccacgcccaccttcccgcccggcagcctgtcgggg
aagccgatggcgatccagcagaagcccaccgcgtacgttcgcccgatggacggccaggac
caggtgccgagcgactccccccagatgaaaccccccctggcgcccgcggaggggttcaac
aacgggcaggcctacggggggaacgccggcaacgccaagaacaagctgccgaagctgagt
ctcggccacacgggggaggtcagcctcccaaatgactccagctgtgttgaagagattttg
cgggagatgacccattcctggccgcctcccctcacagccatacacacgcccgggaaggcc
gaccagaccaagttccccatcccgaacaaggagtcacagcatgtgacctcaggctacaac
acccagaagcgatgtaccctatcagctaacaagcctgctgcgaaaccacagactgcacca
cagaagtcgatgttggaggatgacctgaagatcagcagcgacgaggaggaggccgaacag
caggtgtctgacaagcccaaagccagaggcgcggccctaagtggagcgtcggggagcagc
agtgaatcggagagcagctcggagtcggacacggacgaatcagagagcagctccagcgac
agcgagtacaatcagacgtcccgcacacacactccagagcctgagcccccctcggccaac
aagtggcagctggacagctggttgaataaagtccaggctcaaaccaaacccctggttccc
cctcagccagaacatggcacaggctccatcacccagggtacggggaccttctctccgagg
agcgaagcgccaggagtgggaacggccgccaagaccaagccctgcgtacccaacatcacc
cctggacccaccgcccaaacgctggaccacaaggaaacaaggggaactttctgcccgggc
agcagagagaaggccaaggtcaagctcggccagaaggcctcgggcgagggccagaggtca
aaggtgaggatgtcgccgggcctgtcgtcggggccggaggtcacgacccagaggaggacc
accacggggaagaaacagcccagacgaacggagaggtcaaacagtgcggaggatgctcag
agccagacgtggagcaggaccaaccagcagagtcctgtggctagggagaaggacctgttg
cctcccccctccctggagctccagacccccccgaggccacgaagcaaaccccccagtggg
aaaacagcccccaggaaagaacctcgcagtgctaccaactccaacaccagctccgttact
ccaccggcggcgctccagcagacccccgcgcccacacctgctgtcagtgtcaaccaggac
aagaggaaacaccgaggtccgagcaacaaaatcacgcccaagtcccgcgaattcatcgag
acggactcttcgtcctcgtcctccgaatgccactcggattcggagggagccctcaagatt
cccgcgccgccgccgccaccggcgccgccgccgcaggagaagcgctcggccatcaacacg
cagactctgtccaacaccaacgcgcctcctctcccgccgtgccccgggtcggcggggagc
ctgggaacgccgttcggcagcaaggggctccgagtcaaagacggcggcggcgtgaccgcc
gacgggagcggcggcatcaacggcaccgcctgtaacgccccgagcgtcggcaacgggacc
ggttccttcggcgcttcggttcccgaccccggagggttagggggtcagcgcaaagacccg
gtgcccgtgtcgccgccccccaacgtcggacacgaggtgcctccgtcccccttgagggat
ttccaggagatccagagtttatgggtgaaggtcgagctgagtttgctcggcagggtgccg
ggccaggggtcgggggaaagatcccggtcgggacagcaggccgaaagggacgggagcgcc
gggagggacagggagagacagggggagaggaccggggcggccgagagggagaggcagaag
cagaggacgcccaaaggggagaagccggaggaagagaacgagcggctggcgccggaccgg
gagcgccagggcgacagggacccactgacggagagagagaggccgacggacagagaggac
agagacgggtcgggggtcggggagagggatcggacggcggggaaggacagggagaaggcg
ggccaaggtccgggggcgccggacaaccccgccgcgcaagagcagagtcaccccaggctg
gccgggaggacggagggcaaacacaggaggcaggccgccgggagcgtggcgggaccaacg
gagaaacacggcaacaagagcaagaggaaacacaagtcggaccacagtgagtcgtcggcc
atcggcaataagaagctgcgattggacaaagactgccagctgctcccgtccttcatctct
cccacacacaaccacaggaacggctctgcggatagctcactaaacaggaagcagtctcgg
cggcgtgaagacaagctcctcccccccctcctgtctccgctctccgacgatccgcctccc
aaacggatctgtgacggcggttcctccctcggccaggagggcgtcgccacggggacgcag
ccctgctccacctccacctcctcctccacctccacctcctcttcctcttcctcacacaga
cacaggagaggggaagacaaggcgtcggcacctgcgaccaacggcagcgaagtcgacccc
cacggcgagaagcccggcggagacggttaccacgccaacgggcagtcggattccgaggtg
tggtcggaaccgccgatggaacctgcagaacctcgcaggccgcggctggccttcagcgac
acggtccacagtgcagacttctacatgcaggaggccaagagactgaagcacaaggccgat
gctctgacggacaagttcggtaaagcggtgaactacgccgacggcgccctctccttcatc
gactgtgggaacgccatggagcgagatccactggaggccaagtccccgtacaccatgtac
tctgagaccgtggagctgatcaggtacgccatgaggttgaagaacttcaccagccaatcg
gccaccgtcgccgagaagaagctcgccgtgctgtgtaaccgctgtctgtctctgctgtat
ctgaggatgttccatttgaagaaagaccacgctgtcaagtactctcggtcgctcatggag
tacttcaagaattccgccaagagttcccaccaagcaccctctccctggaggatcaatggg
aaggtcaacgggaccccgtccccactctcgctcagcccctccccggccggcagtggaggg
gcggggggcggatccggaggggccccgggctcgtcgggaagcgtggccatcccccagcgc
atccaccacatggccgccagccacgtcaacatcaccaacaacatcctgcggagctacgaa
cactgggagacggccgacaggctggccgccgatagccaagagttcttccaggagctggat
tcggtgatggagccgctgagtcagccgagcagcatgacggagctggtccgatacatcagg
cagggactgcactggctccgcgcagaggctcacctgctgtaa
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integrated database retrieval system
