Pseudoliparis swirei (Mariana hadal snailfish): 130210109
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Entry
130210109 CDS
T09868
Name
(RefSeq) uncharacterized protein LOC130210109
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
130210109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130210109
Membrane trafficking [BR:
pswi04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
130210109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RBD-FIP
End3
Motif
Other DBs
NCBI-GeneID:
130210109
NCBI-ProteinID:
XP_056296065
LinkDB
All DBs
Position
19:complement(21306558..21319500)
Genome browser
AA seq
1387 aa
AA seq
DB search
MMSLIDLDDDQRWVPTHVNITVLRARGLRTKGKHGSRYLYTIIQVAKEKFTTALVEKAAV
PEWNEECCFELLPGILEDGGRGAYPHGSGDLVLTVMHRVLIGLDVFLGQTIIPLDRIFQE
GTCPRDEWFKMNSKAGRKEKERGELQVTVQFTRNNMTASMFDLTIKDKPRSAFGKLKDRV
TGRKRGDMESSSAIVPGRFAALSGSQPFGEMAGGGSEEPQEVEIAEEKRSKMKDFFKGRL
RKSSDTTSCSSLASEGSVSSMASDNPGPPPSLDLMSDPPSSPVYTSKVRVDTHYGEADLA
KKVLTSQHSSKVLTHKRASSDEASKITTAFPPSNLAVESLKGQTMTQSKSSLCINGSHVY
NSEPSTPKSSGAHQSKLVLLEKCSPLSRSLQNLTKDRGSSAEGRRWSFDKMKKEEKEEEK
EAQPSSPPIQRGGRPVQAEMPVSPDKGRKLRKTLFSAGKSDSLPAKSDQNQAGWTSEGRL
RGWFGSGESQNKPRLEVSPKVESSSDAPPPLPPRSPTPSPCSPPSPSGHVSPDDCNHTNP
FTSSSSPVSIPISPSNPFPSHMQRNPFFEDLIAEESHRSPPFGSSPFHYTTLPSQPCTSS
PANDGEATNMAYIKRERPRPVARQISLPALLPKAAPPHPSSAHRSMSERAGESDDSFDAF
ASSRLNSPKGSLPQKLLRTSPTSSNIHRYFPVNNSGNNHAQDLQTCDEAAPPPLPPRKPL
RTSVSEIYSDGWLHRGQELAVHQEAYLLSQTGAASLQRGQEGESKRNRVSPDPHTTSSEP
SDSLGIPSEPNTNVTSVGFTSEEKLKKFKYEPLEDESDRWGGMLFEQDLYGRTCRGNYGH
PKVNRLSLSAEDTTGNKITSVTVGPQILPDSDTFVADILTAPSTTPSAPDAKALDITSAP
VEEMELYPPETNNVSFSSTSVDLNRNVNNSDFGFIDSDGSSQSDVVDTLKGVMSLGGTFP
PLTEASQIAAYHEETATAPGDVFTLKDTYIPEMNSSFEITASSNKLCHVSPVCKDNCVGD
FTKTQSDSDGNGNPLPEVGAQNQKETFPGVVSARLRPKGESRQNSGGSPSNQSKARDGEF
EQFLCLVQNMSEAREGPLSYQPSKSSLSSLLAQADSSTHHGGPNAPSRISPQDDTRATER
RSDIPFEDLHAQVAPNSRTPSKAKMGPSLHKPSSSSPLHTLSPSAATLHPTPVCCPSIHP
SSTGPGNSPAAFPYASSFSSCSSTCTTTDQPPVDARHSLLPEETQPASSLPRQESRPHPV
KPLTSSQSEKKEGRSVLEKLKSSINPGRGAQQAAAEPERSQEVPVDHSAQYLHLTNMELI
SLLLQQEMDMQKQEAASERQGAQLHKCEADLKKVKLQVRDLEDYIDNLLLRIIEQTPTLL
QVRTRHK
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcattgatagatctggacgatgatcagcgatgggtgcccactcacgtgaacatc
accgtcctgcgcgcgagggggctgcgaaccaagggcaagcatggcagccgctacctctac
accatcatccaggtggcgaaggagaagttcaccaccgcgctggtggagaaggcggcggtg
cccgagtggaacgaggagtgctgcttcgagctgctccccgggatcctggaggacggcggc
cggggcgcctacccccatgggagcggggacctggtcctcacggtcatgcaccgggtgctg
atcggactcgacgtgttcctcgggcagaccatcatccctctggacaggatatttcaggag
gggacgtgtcctcgagatgaatggttcaagatgaactctaaggcgggcagaaaggagaag
gagcgcggggaactgcaggttacagtccagttcactcgcaacaacatgacagccagcatg
ttcgacctcaccataaaggacaaaccccgctctgcttttggcaagctcaaggatcgcgtc
acagggaggaagaggggggacatggagtcctcctcggccattgtgccgggccgcttcgcc
gccctgtcaggatcgcagccatttggagagatggcgggtggaggctcggaggagccacaa
gaagtggagatagcagaggagaagaggagcaagatgaaagatttcttcaaagggaggctg
cgcaagtcgtctgacaccacgtcatgctcgtccctggcttcagagggcagtgtgtcctcc
atggccagtgataaccccggccctccacccagcctggatctgatgtcagaccctcccagc
tctcccgtctacacgagcaaagtgagggtggacacccattacggagaggcagatttagct
aaaaaagtgctcaccagccagcactcctcaaaggtcctcacacacaagcgagcctccagc
gatgaagccagtaagatcacgaccgccttccctccatcaaatcttgcggtggagtctctg
aaaggtcagaccatgactcagtccaagtcctccctgtgtattaacggcagccacgtctac
aactccgagccgtcgactccaaagagctcaggagcccaccagtccaagctggtcctgctg
gagaaatgctccccgctctctcgatccctacagaacctcaccaaggacagaggttcctcc
gccgagggccgacgctggtcctttgacaagatgaagaaggaggaaaaggaggaagaaaag
gaagctcagccatcatctcctccaattcagcgagggggtcgccctgtgcaggcggagatg
ccggtttcgcccgacaaagggaggaagctaagaaagaccttattctctgcagggaagagt
gactctctgccagctaagtcagaccagaaccaggctggttggacgtctgaggggaggctc
cggggctggtttggctccggtgaatcccagaacaagccgaggctggaagtttctcctaag
gtagaaagcagctcagacgcaccccctcccctccctcctcgctcacccacaccctctccg
tgctcccctccctccccctccggtcatgtctcacctgacgactgcaatcacaccaatccc
ttcacctcctcttcctctcccgtctcgatcccaatctcgccctccaaccctttcccctca
cacatgcagcgcaatcccttttttgaggacctcatagcagaagagtcacataggtcccct
cctttcggctcatccccctttcattacaccactctgccttcccagccctgcacatccagc
cccgctaatgatggggaagcgacaaatatggcttacataaagcgggagcgccccaggcca
gtagctaggcagatatctctccctgcattattacccaaagcagccccacctcacccctcc
tccgcccaccgctccatgtcggagagggcgggggaatcggacgactcgtttgatgccttc
gcctccagcaggctaaactcaccgaaagggagtcttcctcagaaactgctgagaaccagt
ccaacatcatctaatatacataggtattttccagttaataacagcggcaataatcatgca
caagatctgcaaacatgcgacgaggcggcgcctccacctttgcctccgcggaaaccttta
cgaacttccgtgagcgagatttactccgacggctggctgcacagaggtcaagagctggcg
gtccatcaagaagcctacctgctctctcagaccggcgcggcctcgctgcaacggggacaa
gagggagaaagcaaaaggaaccgggtgtctccagaccctcacaccaccagcagcgagccc
tccgactccctcggcattccctctgagccgaacacaaatgttacttcagtaggattcacg
tccgaagaaaagcttaaaaagttcaaatatgaacctttggaggatgaaagcgaccgctgg
ggagggatgctgtttgagcaagacctgtacggacgcacgtgcagagggaactacggacac
cccaaagtcaatcgcttatcgttgagcgctgaagacacgacaggaaataagatcacatct
gtgaccgtaggacctcaaatacttcctgatagtgacacatttgtcgcagatattttaaca
gcgccatctactacaccctcagcaccagatgcaaaagcacttgacattacaagcgcccca
gtagaggagatggagttgtatccacctgaaaccaacaatgtgtctttctcatcaacctca
gtagatctgaacaggaacgtgaacaactccgattttggtttcattgattccgatggctcc
tctcagtcagacgtcgtcgacactctcaaaggcgtcatgagtttgggcgggacttttcct
ccactgacggaagcttcccagatcgctgcttaccatgaagagacagcgaccgcacccggg
gatgtgttcaccttgaaggacacttacatacccgagatgaactcttcctttgaaataacc
gcttcctctaacaaactctgtcacgtctccccagtttgcaaagacaattgtgtcggggat
tttacaaagacacaaagtgactctgatggtaatgggaacccgctccctgaagtgggcgca
cagaaccagaaggagacatttcccggtgtggtgagtgcacgtttgagaccaaaaggagag
tcccggcagaacagcggcggcagcccgagcaaccagagcaaagcgagggacggagagttc
gaacagttcttgtgcctcgttcaaaacatgtcagaagccagggaaggaccgctgtcgtac
cagccctcgaaatcctctctttcttccttactggcacaagcagatagcagcacacatcac
ggaggccccaatgcgccgtcgagaatatctccgcaagacgacacgagagcgacagaaaga
cgctctgatatcccttttgaagaccttcacgctcaggtagcacccaactccagaacgcct
tcaaaggcaaagatggggccatctttgcacaaaccctcctcttcctcccccctgcacaca
ctctccccgtcagctgccacgctccaccccacccctgtctgttgcccctccatacacccc
tcaagcacggggcccggcaactctccggctgcgttcccctacgcctcctctttctcctcc
tgctcctccacctgcaccaccactgaccagcccccggtcgatgcacgccactcacttttg
cctgaggagactcagcccgctagcagcctgccccgtcaggagagcagacctcacccagtg
aagccgttgacctccagtcaatcggagaagaaggaaggtcgttcggttctggagaagctg
aagtcctccatcaaccctgggcgtggcgcccagcaggctgcagcagaacctgagaggagt
caggaggtgcccgtggaccactcggcccagtacctacacctgaccaacatggagctgatc
tcgctgctgctgcagcaggagatggacatgcagaagcaggaggcggcgtccgagcggcag
ggggcgcagctgcacaaatgtgaagcggatctgaaaaaggtcaagttgcaggtccgagac
ctggaggactacatagataatctattactgcggatcatcgagcagacaccaacgctcctt
caagttcgcacgcgacacaagtga
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