Pseudoliparis swirei (Mariana hadal snailfish): 130210188
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Entry
130210188 CDS
T09868
Name
(RefSeq) LIM and calponin homology domains-containing protein 1-like isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
130210188
Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
130210188
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Syntaxin_2
Motif
Other DBs
NCBI-GeneID:
130210188
NCBI-ProteinID:
XP_056296173
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All DBs
Position
19:complement(24963666..25065393)
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AA seq
1292 aa
AA seq
DB search
MASPVADIGQSHQHHPVTESAADSAFQEAQKWIEAVTGRCFGDKDFKGGLENGILLCELL
SSIKPGLVKKINRLPTPIAGLDNLGVFLCGCEELGLKGTQLFDPGDLQDTSTRPNAKGSD
CSRKLKNVLITIYWLGRAANGCTSYNGPTLDLKEFEGLLSQMRKEAEEAESPQRSIRDSG
YIDCWDSERSDSLSPPRHGREDSFDSLDSFGSRSRQTPSPDVLVPRGSSDGRGSDSESDG
APHRKIPDVRKDDMSARRTSVSEPRTAVPFNQYLPNRSNHSGYVPAPLRKKKSDGEDGAR
KSWSTATSPVAGERPFSTPARSCSEELFHHSTTRAATPVAVAASPVASSVKHPPVTEQQQ
AESVRKGAAGVPTVADAEPRETQSRQAPTSPKHASVPSPPHFLPVPAAMATATTDSGRRK
GRALSECDDPQRGNSRLDGSPPATFSRTRSASGDPQSVSMIDMRGQEEEEEEEEEEEAMQ
PHSQVRHELMHSQYHRRKEEDDHWQDDLARWKNRRRSISQDLIKKEEERKLMEQLMGGGP
CTSHRRRSIKTYREIVEEKERREYDLRDAYRRAGSHEEAELILQHYAQRFSISETVLDRL
QLPKLLDRSVSDDPSLARSPFPLSVSPSPATPDPFDVDPNGPLRYLRQQSAPPPKFTSTL
EARIEELPTEVPHQRPQVRSRSSEPPSSRTLAPRPGLCFQPRPSAGEPRTCKADGLFRVN
GDIGSVDVPTTPESRGRESPPRFLASPSKTSNSAAGAPSAAAASPTRSPPPSTRGQDAPA
GSTKAEEAPSGSEPAPKDVQEERVIHHSTAPSRPTSLPSELQKPEESFVEAGSHSAAAPE
EEKSNAAAARHAPPAELRCRRVRAHWDEKKSLASPAQPRCAHTEDKHANVVQSGVDTRES
QLATLQASVPSPRDLSQRRENLPSLAAPGSFEYHPPRDTTAEIANSVRSPLATSNPNLRW
EFFVLPEEMEKDCRGNVSVPVLPQARRTDSWSWHPDEERKRQERWQQEQERMLQEKYRRE
QEKLKEEWERAQREVAEEERKYHEEERRILEDTVAPLTPRSSALPSPSRGEASSASEPRD
AIVRSLADWERKQELQSTESVEWKRRENDRTSDISTADDSMKTVRSSVSPGSRRAESPGH
SLQNGQRPAATSSAQTSTPAKRREETTADGNKRGRPAGDRKSGRPIDSNVCRSSSKPPAA
CPPSPDTPPPAPNRSVSGKKLCSSCGQALGKGAAMIIETLSLYFHIHCFMCGVCKGRLGD
TTTGTDVRIRNGLLNCHQCYISSRSAGQPTTL
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtccggttgcagacatcggacagtctcatcagcatcaccctgtgactgagtcg
gccgctgactccgcatttcaggaggcgcagaaatggatagaggctgtcaccgggagatgc
ttcggtgacaaggacttcaaaggagggctggagaatgggattctgctctgcgagttgctg
agctccatcaaacccggcctagtgaagaaaatcaaccggcttccaacacccatagccggc
ctggacaacctcggtgtgttcctgtgcggctgtgaggagttgggactgaagggcacccag
ctgtttgaccctggcgacctccaggacacgtcgacgcgccccaacgccaaaggcagcgac
tgcagccgaaagctaaagaatgttctgatcaccatctactggttgggtcgtgctgccaac
ggctgtacttcctacaacggtcccacgctggacctgaaagagtttgagggcctgctgtca
cagatgcgaaaggaggcggaggaggcggagagccctcagcgcagcatccgggacagcggc
tacatcgactgctgggactccgagcgcagcgactcgctctcgccgccgcgccacggccgc
gaggactccttcgacagcctggactccttcggctcgcgctcacgacagacgccgtcgcca
gacgtcctggtcccgcgcggcagcagcgatggccgcggcagcgactccgagtcggacggc
gccccccaccggaagatcccggacgtccgcaaggacgacatgtcggcgcggcggacgtcc
gtcagcgagccgcgcaccgccgtgcccttcaaccagtacctgcccaaccggagcaaccac
agcggctacgtgccggcgccgctgcgcaagaagaagagcgacggcgaggacggagcgcgc
aagagctggagcaccgccacgtcgccggtagccggagagcggccgttcagcactccggct
cgctcgtgctcagaggaactcttccaccattcgacgactcgagccgcgacccccgtggcg
gtcgcggcgagccccgtcgcctcctccgtgaaacatccacctgtgacggagcagcagcag
gcggagtctgtgaggaagggagccgccggtgtcccgacagtcgcagatgcggagccgcga
gagacgcagtcccgccaagcgccgacttctcccaagcacgcctccgtcccgagtcccccc
cacttccttcctgtgcccgctgccatggcaacggctacgaccgattcaggccgacggaag
ggacgggcgctgagtgaatgtgacgacccgcaaagagggaactctcggttggacggcagt
cctccagcaacattcagccgcacacgtagtgcgtcaggtgacccgcaaagtgtgagtatg
atcgacatgcgcggccaggaggaggaagaggaggaagaggaggaggaggaggccatgcag
cctcacagtcaggtgcgtcacgagctgatgcacagccagtaccaccggaggaaggaagag
gacgaccactggcaggatgacctggcccggtggaaaaatcggaggaggagtatctcccag
gacctgatcaaaaaggaggaggagaggaagctgatggagcagctgatgggtggaggccct
tgcacctcccacaggaggagaagcatcaagacctacagagagatcgtggaggaaaaggag
cgccgcgagtacgacctgcgagacgcgtaccggagagccgggagccacgaggaggcggag
ctcatcctgcagcactacgcccagcgcttctccatcagcgagacggtcctggaccgcctc
cagctgccgaagctcctggaccgcagcgtgtccgacgacccctccttggcccgctctccc
ttccccctctccgtgtccccctcccccgcgaccccggaccccttcgacgtggaccccaac
gggcccttgaggtacctgcggcagcagtccgccccgcctccgaagttcacgtccacgctg
gaggcgcgtatcgaggagctccccacagaagtgccgcaccagcggcctcaggttcgctct
cgctcgtccgagccgccgtccagccggaccctggcgcccagaccggggctttgcttccag
ccccggccctcggcgggtgaaccacggacctgcaaggcggatggtttgttccgagtcaac
ggcgacatcgggagtgtcgacgttcccaccacgcctgagagtcgaggaagggaatctcct
cctcgtttcctggcgtctccttccaaaaccagcaacagtgctgcgggcgctccgtcggca
gcagcagcctccccgacacgcagcccacccccctcgaccagaggtcaagacgcccccgcg
gggtcaacgaaggccgaggaggcgccaagtggctcggaaccagctcctaaagacgtgcag
gaagaaagagtcatccatcattcaacagcacccagccggcccacctcgctcccatcggag
ctgcagaagccagaagaaagcttcgtggaggctggaagccactcggcagctgctccagag
gaggagaagtccaacgctgcagcggcacgccacgcgcctcctgcagagctccgatgccgg
cgtgtgcgtgcacattgggacgaaaaaaagtcacttgcatcccccgctcagccgcgatgc
gcgcacactgaagacaaacacgccaacgtcgtccagtcaggagttgacacgcgggaaagt
cagcttgcaactttgcaggcgagtgttcccagtccccgggacttgtctcagaggagagag
aatttaccgagcttggccgctccagggtcatttgaatatcacccaccgagggacacgaca
gcagaaattgcaaacagtgtcaggtctccgctggcaaccagcaaccctaatttacgctgg
gagttcttcgttctgccagaagagatggagaaggattgtcgtggaaacgtgtctgtcccg
gtgttgccccaggccaggcggactgacagctggtcttggcacccggatgaggagcgaaag
cgtcaggaaaggtggcagcaagagcaggagcgcatgctgcaggaaaagtaccggcgcgag
caggagaagctgaaggaggagtgggagagagcgcagagggaggtggcggaggaggagagg
aagtaccacgaggaggagcgtaggatactggaggacacggtggcgccgctgaccccgcgc
tcctccgccctgccctcgcccagccgaggagaggcctcctccgcctcggagccccgcgac
gccatcgtccgctcgctggccgactgggagcgcaagcaggagctgcagtcgacggagagc
gtcgaatggaaacgccgagaaaacgaccggaccagcgacatcagcaccgccgacgacagc
atgaagaccgtccggagctcggtgagtccgggcagccgtcgggcggaaagtcccggtcat
agtctgcagaacggccaaagaccggcggcgacgtcatcggcccaaacctcgacgccggcg
aagagacgggaagagacgacggcggacggcaacaaacgcggacggcccgcgggagacagg
aagagcggtcgtcccattgatagtaacgtgtgccgcagctcatccaaaccccccgctgca
tgtcctccatccccagacacgccgcctccagcacccaacaggtcggtcagtgggaagaag
ctgtgttccagctgtggccaggctctggggaagggggcggccatgatcatcgagaccctc
agtctgtacttccacatccactgcttcatgtgcggtgtgtgtaagggacggttaggagac
acgaccacggggaccgacgtccgcatcagaaacggactcctcaactgccaccagtgctac
atcagctcccgctcggccggacagccgaccacgttgtga
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