Pseudoliparis swirei (Mariana hadal snailfish): 130210289
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Entry
130210289 CDS
T09868
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130210289 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130210289 (dhx36)
03012 Translation factors [BR:
pswi03012
]
130210289 (dhx36)
Enzymes [BR:
pswi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130210289 (dhx36)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130210289 (dhx36)
Translation factors [BR:
pswi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
130210289 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
HA2_C
HA2_N
nSTAND3
AAA_22
AAA_19
PhoH
ATPase
HerA_C
Motif
Other DBs
NCBI-GeneID:
130210289
NCBI-ProteinID:
XP_056296325
LinkDB
All DBs
Position
20:19774403..19796087
Genome browser
AA seq
1073 aa
AA seq
DB search
MSSGHGGRGERRGRRGGRGHRDGSRDRWDRGGGSGSSGQRSDLDQDPGGGGQRDRPPPHL
KGREIGMWYARYGVARRKQGDRRSRAVVQMDEAREQHITKLLRSVQNDFPGRGRDWSARA
STSNSCQPGANSSGHCYFDGEMSEEEKLKIEFKSEEEEEDVTPGQKKATLKSQRYFSPAV
VKDEPPDTWDDEEQQEKEKEKGKEEKETLRRKDRDLEFLIQEVARDGSLDDRLKRDLQSK
KSESKYKEMLKFRERLPSYAKQEELVELINSNRVLVVSGETGCGKTTQVPQFILDDYINR
GVGSMCRVVCTQPRRISAISVAERVAAERAESVGNANSCGYQIRLQSRLPRKQGSILYCT
TGIILQWLRTDPLLSTISHLVLDEIHERNLQSDVLLVIVKNILTLRDDLKIILMSATLNA
EKFSRYFDNCEIIHIPGLTFPVEEFLLEDVVELTSYRCQNLDRRPARKRGFMQGRNSRPE
KEAKEAEYKENWPSYARTLQDRYSDNTIETLEMLDNDDKIDLELIVTLIRHIVLKEEDGA
ILVFLPGWDNISGLNDLLVAQQMFRSDRFVIIPLHSLMPTVNQTQVFKRPPPGIRKIVIA
TNIAETSITIDDVVYVIDGGKIKETHFDTSNNISTMTAEWVSLANAKQRKGRAGRVCPGK
CYHLYNGLRASLLDAYQLPEIMRTPLEELCLQIKILNLGSIAEFLEKSLDPPTTIAINLA
IKNLVDLNALDCSENLTALGFHLARLPVQPHIGKLILFGALLGSLDPVLTIAASLSFKDP
FFIPLGKEKMADMRRRTLSRNSKSDHLTIVNAFQGWEDAKHRGARYEREYCWDNFLSANT
LQMLHNMKGQFAEHLMNTGFVSSRDPKDPASNVNSDNEKLIKAVIVAGLYPKVATIRPSG
SKKRPGVKAYTQADGKVCIHPKSVNAEETNFNYSWLIYHLKMRTSSIFLYDCTEVSPFSL
LFFGGDITIQKDEDQETIAVDQWIVFRSPARIAHLVKSLKRELDSLFEEKIRHPAPVDWQ
NRQSKDCAVITAIIDLITTQEKPTGVGGRGYEKPWASAPPRGQHRQFNDDDDD
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgagttctggacatggtggtcgaggagagagaagaggcaggagaggaggtcgaggacac
agagatggaagcagagaccgatgggacagaggaggtggatctggttcgagtggacaacgg
tccgacttggaccaggacccaggaggaggtggacaacgggaccgtcctcctcctcacctg
aagggacgtgagattggaatgtggtacgcacgatacggagtcgcgaggaggaagcagggt
gaccgcagatcgcgggcggtcgtccagatggatgaggccagagaacagcatattaccaag
ctgcttcgctccgtccaaaatgatttccctggtcgtgggagggattggagtgcaagagcc
tctacgtctaacagctgccagccaggtgcaaatagcagtggtcattgctacttcgatggg
gaaatgtctgaagaggaaaaactgaagattgagttcaaatctgaggaagaggaggaagat
gttactccaggccagaagaaagcaactctcaaatcacaacgttacttctcccctgcagtc
gttaaagatgagcctccagacacgtgggatgacgaagagcagcaggaaaaggagaaggag
aaggggaaggaggagaaagagacactgagaaggaaggacagggacctggagttcttaatc
caggaagtagccagagacggttcacttgatgaccgcttgaaaagagatctgcagagcaag
aaatcagaatcgaagtacaaagaaatgctgaaattccgggaaagactaccatcttatgcc
aaacaagaggagctggttgagctaatcaactcaaaccgtgtcctggtggtgagtggggaa
acagggtgtggaaagaccactcaggttccccagttcatcctcgacgactacatcaacaga
ggcgtgggctcaatgtgtcgtgtggtctgcacgcagcctcgtcgcatcagtgccatctcg
gtagcagagcgtgtcgcagcagagagggcagaaagtgtaggaaatgcaaattcttgtggt
taccaaatccgtctgcagagccggttgccacggaaacaaggctcgatcctgtactgtaca
acaggcatcattcttcagtggctgcgtacagacccattattgtccaccatcagccacctg
gtgttggatgagatccacgaaaggaacctgcagtctgacgttttgctcgtcattgtgaag
aacatactcacccttcgagatgaccttaagatcatcctcatgagcgccacgctcaacgca
gagaagttttctagatattttgacaactgtgagatcattcacatccccggtttgacgttc
ccagtcgaagagttcctacttgaggacgttgtggagttaaccagttatcgttgccagaat
ctggaccgtcgccccgcaaggaagagaggcttcatgcaggggaggaactccaggcctgag
aaggaggcgaaagaggctgaatacaaggagaattggcccagttacgcacgcacactgcag
gacagatactccgacaacaccattgagacgctggagatgttggacaatgacgacaagatt
gacctggagctgatcgtgacactgattcgccatattgtgctcaaggaggaggatggagcc
atcttggtcttccttcctggctgggacaacatcagcggtctcaacgacctgctcgtggct
cagcagatgttccgatcagaccggttcgttatcatccctctgcactcgctcatgcccacc
gtaaaccagacgcaggtgttcaaaaggcctcctcctggaattcgaaagattgtgattgct
accaatatagctgagaccagcatcactatagatgatgttgtctatgtgatcgatggaggc
aagattaaggagacccactttgacaccagcaacaacatcagcaccatgacggcagagtgg
gtcagcctggccaacgccaaacagaggaaaggacgtgccggcagagtgtgtccggggaag
tgctatcatctgtacaacggtctcagggccagcctgctggacgcgtatcaattacctgaa
atcatgaggactccactggaggagctctgcctgcaaatcaagattttgaatctggggtcg
atagctgaattcctggagaaatccctggaccctcccactacaatcgccatcaacctcgcc
atcaagaacctcgtagacctgaatgccctggactgctcggagaatctgaccgcgttgggt
ttccacctggctcgcctgcctgtgcagccgcacatcggcaaactcattctgtttggagct
ctgttgggatccctggaccccgtactcaccatcgcagcctcactcagcttcaaagaccct
ttcttcatacccctgggtaaagagaagatggcagacatgaggagaaggaccctgtccaga
aactccaagagtgaccacctcactattgtcaatgccttccagggctgggaggacgccaaa
caccgaggcgccaggtatgaaagggagtactgctgggacaacttcctgtctgccaacaca
ctccagatgctgcacaatatgaaaggccagtttgctgagcatctgatgaatacaggcttc
gtcagcagcagggaccccaaagaccccgcatccaatgtcaactcggacaatgagaagttg
atcaaggcggtgattgtagctggtctgtacccgaaggtggccaccatcagaccgtcgggc
agcaagaagaggcccggggtgaaggcgtacactcaggctgacgggaaggtgtgcatccac
cccaaatccgtcaatgcggaagagacgaacttcaactactcctggctcatctaccacctc
aagatgagaacgagcagcatcttcctctacgattgcaccgaggtgtccccgttctcgctg
ctgttcttcggcggggacatcacaatccagaaagacgaggaccaggagaccatcgccgtg
gaccagtggatcgtcttcaggtccccggcacgcatcgctcatctcgtcaaaagcttaaag
agagagctggactctctgttcgaggagaagatccgtcacccggctcccgtggactggcag
aaccgtcagtccaaagactgcgccgtcatcacggccatcatcgacctcatcaccacccag
gagaagccaacaggcgtcggcgggcggggctacgaaaagccgtgggcgtcggcccccccg
aggggacaacacagacaattcaatgacgacgacgacgattag
DBGET
integrated database retrieval system
