Pseudoliparis swirei (Mariana hadal snailfish): 130210302
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Entry
130210302 CDS
T09868
Symbol
lrfn1
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130210302 (lrfn1)
04990 Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
130210302 (lrfn1)
Cell adhesion molecules [BR:
pswi04515
]
Immunoglobulin superfamily
SALM family
130210302 (lrfn1)
Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
130210302 (lrfn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
Ig_3
I-set
LRR_4
LRR_1
ig
Ig_2
LRR_5
fn3
LRR_9
LRR_14
C2-set_3
Ig_DSCAM-DSCAML_C
Sp38
DUF4834
Motif
Other DBs
NCBI-GeneID:
130210302
NCBI-ProteinID:
XP_056296367
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All DBs
Position
20:18448562..18556968
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AA seq
759 aa
AA seq
DB search
MDRLVVCVLLLCAALVKGYSCPGRCICQHLSPTLTLLCAKTGLLFVPPSIDRRTVELRLT
DNFITVIRRKDFFNMTSLVHLTLSRNTISQIIPHSFVGLRSLRALHMDGNRLSAIKTDQF
KGLINLRHLILGNNQIAEVAPTSFDEFVSTIEDLDLSSNNLRTLPWEAIARMTNINTLTL
DHNLIDHIGAGTFTLLTKLVRLDMTSNRLQKLPPDSLFQQAEVLADTRGSGFSSLAVSFG
GNPLHCNCELLWLRRLTREDDLETCASPDHLMDKYFWSIQEEEFICEPPLITKHLSTKPY
VMEGQGVTLKCKAVGDPDPDIHWRSPDGKLVHNNSRTILYDNGTLDILITTLKDSGTFNC
VASNAAGIATAAVEINMIPLPLFVNNTGHMREDPGLSDITTSSKSGNDTKGYDKQGRRVM
VSELTSSSAVIRWPSERHIPGIRMYQIQYNSTADDTLVYRMIPSTSKNFLINDLAAGREY
DLCVLVVYDDGITSLTAIRVVGCVQFHTAREVSQCRFMHSQFLGGTMIIIIGGIIVASVL
VFIIILMIRYKAYSDPEDSKTKVSSSMHSQTNGSQQRLQRSVSKQPSDEGQREARAPKEV
MALVLRVDNEKKENPAATTVVLEVELPPMAVDKTQRRTSLDAQRSGPPSDDTQTDSSLTG
STMSLCLIGPNAGSKEAPRLKDRKSALANMGLLPNELARTRHRFSFDGGDYSIFQSHSYP
RRARTRWHKSTNQLNTESSPLANRRVTFSSTEWMLESTV
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atggaccgcctggtcgtttgcgttctgctgctgtgtgcagctctggtgaagggatacagc
tgccccggccgctgtatctgtcagcacctctcccccactctgactctgctgtgtgctaag
acgggtctgctgttcgtaccaccctccatcgaccgcagaaccgtagagctgcgactcaca
gacaacttcatcaccgtcattcgcaggaaggactttttcaacatgacaagtttggtccac
ctcaccttgtcccggaacaccatcagccagatcatcccccactcttttgtcggcctgcga
tccctacgggcgctccacatggatggaaaccgcctgagtgcaataaagactgaccaattt
aaaggcctcatcaacctgcggcacctcatccttggaaacaaccagatcgccgaggtggcc
cctacctcctttgatgagtttgtttccaccatagaggacttggatctttccagtaacaac
ctgcgcacccttccctgggaagccatagccagaatgaccaacattaacacactcacactg
gaccacaacctgattgaccacattggagctggcactttcacgttgctcaccaaactggtt
cgcctggacatgacctccaacaggctgcagaaactgccaccagacagcttattccagcaa
gcagaggtcctggctgacaccaggggctccggcttctcttcgctggcagtgagcttcggt
ggaaaccctcttcactgtaactgtgagctgctgtggctgcgcaggctgacaagagaggat
gatctggagacctgtgcctcgccagaccacctcatggacaagtatttctggtccatccaa
gaagaggagttcatctgcgagcctccgctgatcaccaagcatctttccacgaagccttat
gtgatggaagggcagggtgtgactcttaaatgcaaagcagtgggtgacccagacccagat
attcactggcggtcaccagatggcaagctggtgcataataactcccgcaccatcctgtac
gataatggaacccttgatattctcatcaccacgctgaaggacagcggcacatttaattgc
gtggcgtccaatgctgcaggcatcgccacagctgctgttgagatcaacatgatcccctta
cccttgtttgttaacaacacaggccacatgcgcgaggaccccggcctctcagacatcacc
acctcctctaaatctggcaacgacaccaaaggctacgacaagcagggccggagggtgatg
gtctccgagctgacctcctcctccgctgtgatccgttggccttctgagcgccatatcccc
ggcattaggatgtaccagattcagtacaacagcacggcagatgatactttggtgtacaga
atgatcccgtcaaccagcaagaacttcttaatcaatgatctggccgcaggacgagagtat
gacctttgtgtgctggtggtttacgacgacggcatcacatcactcacggccatacgtgtg
gtcggctgtgtgcagttccatacggccagagaggtcagccagtgccgcttcatgcacagc
cagtttctgggaggcacaatgatcatcattattggtggtataattgttgcgtcggtgctt
gtcttcattatcatcctgatgatccgttacaaggcctacagcgacccagaggacagcaag
accaaggtcagttccagcatgcactcgcagaccaatggcagccagcagcggctccagcgc
tccgtctccaagcaaccgtctgacgagggccagcgtgaagctcgcgcgcccaaagaggtc
atggcgctggtgctgagggtggacaatgagaagaaagagaatccagcagccaccactgtc
gtcctggaggtggagctgccgcccatggctgtcgacaagacgcagagaagaaccagcctg
gatgcacagcgctctggccccccatctgatgacacccagacggacagtagcctgacgggc
tccaccatgtccctgtgtctcatcggccccaacgctggctccaaggaggctcccaggctc
aaggacaggaaaagtgctctggcaaacatgggactgcttccaaatgagctggcacgaact
cggcacagattctcatttgacggaggagattactccatttttcagagtcatagttaccca
cgcagagcgaggacgaggtggcacaagtccaccaaccagctcaacacggagtcatcgccg
ctcgccaacaggagagttacgttcagcagcactgagtggatgcttgagagcacagtctga
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