Pseudoliparis swirei (Mariana hadal snailfish): 130210317
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Entry
130210317 CDS
T09868
Symbol
actn4
Name
(RefSeq) alpha-actinin-4 isoform X1
KO
K05699
actinin alpha 1/4
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04510
Focal adhesion
pswi04520
Adherens junction
pswi04530
Tight junction
pswi04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130210317 (actn4)
04520 Adherens junction
130210317 (actn4)
04530 Tight junction
130210317 (actn4)
09142 Cell motility
04810 Regulation of actin cytoskeleton
130210317 (actn4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130210317 (actn4)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pswi04812
]
130210317 (actn4)
04147 Exosome [BR:
pswi04147
]
130210317 (actn4)
Membrane trafficking [BR:
pswi04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
130210317 (actn4)
Cytoskeleton proteins [BR:
pswi04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
130210317 (actn4)
Exosome [BR:
pswi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
130210317 (actn4)
Exosomal proteins of colorectal cancer cells
130210317 (actn4)
Exosomal proteins of bladder cancer cells
130210317 (actn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CH
Spectrin
EFhand_Ca_insen
EF-hand_1
EF-hand_7
EF-hand_6
EF-hand_8
EF-hand_5
XisI
Motif
Other DBs
NCBI-GeneID:
130210317
NCBI-ProteinID:
XP_056296393
LinkDB
All DBs
Position
20:21664495..21710640
Genome browser
AA seq
899 aa
AA seq
DB search
MVDYHNANNQSSAGGAQIYMEQENDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKSGTQIE
NIEEDFRDGLKLMLLLEVIAGGRLPKPERGKMRVHRINNVNKALDFIASKGVKLVSIGAE
EIVDGNAKMTLGMIWTIILRFAIQDISVDETSAKEGLLLWCQRKTAPYKNVNVQNFHISW
KDGLAFNALIHRHRPDLIDYDRLRKDDPVTNLNNAFEVAEKHLDIPKMLDAEDIVNTARP
DEKAIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENELMMEDYEKLASELLEWIRRT
VPWLENRTQEKTVNDMQAKQEDFRDYRCVHKPPKVQEKCQLEISFNTLQTKLRLSNRPAF
MPSEGRMVSDINGAWLTLEGAEKGYEEWILSEIRRLERLEHLAEKFYQKAAIHESWTDGK
EVMLTQKDYETSTLSEVKALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSASVN
ARCQKICDQWDTLGAFTQSRKESLERTEKQLESIDELYLEYAKRAAPFNNWMEGAMEDLQ
DMFIVHNIEEIQGLITAHDQFKSTLAEANKEREAIQSIQAEVRKIAQSNGIKLSAANPYT
TITPESIDGKWEKAMAMVPVRDTALQDELNKQNSNDALRAKFATQANTVGAYIQAKMEEI
GRISIEMNGTLEDQLTNLREYQKNIMSYMPEINTLEGDHQLIQEALIFDNQYTSYTMEHL
RVGWEQLLTTIARTINEVENQILTRDAKGISQEQLHEYRASFNHFDKDHSGALMAEEFKA
CLISLGYDVENEKQGDSEFTRIMGIVDPNGSGTVTFQAFIDFMSRETTDTDTADQVISSF
KILAADKAFITAEELRRELPPDQAEYCIARMAPYLGADAAPGALDYMSFSTALYGESDL
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atggtagattatcacaacgctaataaccaatcctcggccggaggcgcgcaaatctacatg
gagcaagagaatgactgggaccgggacctgctgctagacccggcgtgggagaaacagcag
aggaagacgttcacggcatggtgcaactcccacctgaggaagtccggcacgcagatcgaa
aacatcgaggaggacttcagggatgggctcaaactcatgctgctgctggaggtcatcgca
ggcggacggttacccaaacctgagcgaggaaagatgagggtgcacaggatcaacaatgtg
aacaaagccctggacttcatcgccagcaaaggagtgaagctggtctctattggagccgag
gaaatcgtggacggaaatgccaagatgaccttgggaatgatctggaccatcatcctccgc
ttcgccatccaggacatctccgtagacgaaacttctgcgaaggagggtctcctcttgtgg
tgccagaggaagaccgcgccctacaagaatgtcaacgtgcagaacttccacatcagctgg
aaggacggtctcgccttcaacgctctgatccacagacacagaccggatctcatcgattac
gaccgtctcagaaaggacgacccggtgaccaatctgaacaacgccttcgaggtggctgag
aagcacctggacatccccaagatgttggacgcagaggacattgtgaacactgctcgtccg
gatgagaaagccataatgacttatgtgtccagtttctaccatgccttctctggagcccag
aaggccgagacagccgccaatcgcatctgcaaagtgctggctgtcaaccaggagaatgag
ctaatgatggaggactacgagaagctcgccagcgagctgctggagtggatccgtcgcacc
gtcccctggctggagaaccggacccaggagaagaccgtgaacgacatgcaggcgaagcag
gaggacttcagggactaccgctgtgtccacaagccacctaaggtccaggagaaatgccag
ctggagatcagcttcaacactctgcagactaaactgagactcagcaacaggccggccttc
atgccatccgaaggacgcatggtgtctgatatcaacggagcgtggctaactctggaggga
gcggagaagggctacgaggagtggatcctcagcgagatccggcgcctggagaggctggag
cacttggccgagaagttctaccagaaggcagccatccacgaatcctggactgacggtaag
gaggtcatgctgacgcagaaagactacgagacctccaccctgtcggaggtcaaggcgttg
ctacgaaaacacgaggcctttgagagcgacctggcagcccatcaggacagagtggagcag
atcgccgccatcgcacaggaactcaacgagctggactactacgactcagccagcgtcaac
gctcgctgtcagaagatctgcgaccagtgggacaccctgggcgccttcacccagagccgc
aaagagtccctggagaggacggagaagcagctggagtcgatagacgagctgtacctggag
tacgccaagagggcggcgcccttcaacaactggatggagggagcgatggaggacctgcag
gacatgttcatcgtccacaatatcgaggagatccagggtctcatcacggcccacgatcag
ttcaagtccaccctggcagaggccaacaaggagcgggaggccatccaatccatccaggcc
gaggtgcggaagatcgcccagagcaacggcatcaagctgagcgcagccaacccctacacc
acgatcacacccgagagcatcgacggcaagtgggaaaaggcgatggccatggtgccggtg
cgtgacaccgccctgcaggacgagctcaacaaacagaactccaacgacgcgctgagagcc
aagttcgccacccaggccaacacggtcggcgcctacatccaggccaagatggaggaaatc
ggcaggatatccatcgagatgaacggcaccctggaagaccagctgaccaacctgagggag
tatcagaagaacatcatgtcgtacatgcccgaaatcaacacgctggagggcgaccatcag
ctcatccaggaagccctcatcttcgataaccagtacacctcctacacgatggagcacctc
cgcgtgggctgggagcagctgctgaccaccatcgccagaaccatcaacgaggtggagaac
cagatcctgacgcgtgacgccaagggcatcagccaggagcagctccacgagtatcgcgcc
tccttcaaccactttgacaaggaccacagcggggcgctgatggccgaggagttcaaggcc
tgcttgatcagtctgggctacgacgtggagaacgaaaagcagggagacagcgagtttact
cgcattatgggcatcgtggaccccaacggcagcggcactgtgaccttccaggccttcatc
gacttcatgtccagggaaacgaccgacacggacaccgccgaccaggtcatctcctctttt
aagatcctggccgctgataaggccttcatcacagccgaggagctgaggagggagctcccc
cccgaccaggcagagtactgcatcgcccgcatggcgccctacttgggagcggacgccgcc
cccggcgccctggactacatgtccttctccaccgccctatatggagagagtgacctgtag
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